RNA id: AMCG00021748


Basic Information

Item Value
RNA id AMCG00021748
length 1554
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00021748
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27643284 ~ 27680343 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGTGCCTGACTACATGCAGTGCGCTGAGGACCACCAGACTGTCCTAGTGGTGGTGCAGCAATTGGGCATCGTTCCAGAGGAGCAGTTTTTTCGCATTTACAAGCGGATCGCCAGCGTCAACCAGGTCAGCATCCGTGATTCCCAGAGAGTACTCTACATCCGCTACAGGCATCACTACCCTCCGGAGAACAATGACTGGGGGGATTTCCAGACGCATCGCAAGGTGGTGGGCTTGATCGCCGTGACCGAGTGCAACTCCTCCAAGGAGTGGCCCCAGACCTCCGAGCGCTTCCATGGCCAGAAGGATGTGTTCGGCTCCACGCTGTACGACTCCCGACTGCTGGTGTTCGGGCTTCGAGGGGACATAGCGGAGCAGAGCCGCACAGACGTGGCCTTCTACCCCAGCTACGAGGAGTGTGATGAGGTGGAGAAGAGGGTTGAGGACTTCATCGAGTCCATCTTTATTGTGCTGGAGTCCAAGCGCTTAGACAGAGCCACCGACAAATCTGGGGACAAAATCCCTTTGCTCTGTGTCCCCTTTGAAAAAAAGGACTTTGTAGGGCTTGATACTGACAGCAGGCACTACAAGAAGCGTTGCCAGGGGCGAATGAGAAAGCATGTTGGGGACCTGTGTTTGCAGGCAGGAATGCTACAAGATGCCCTAGTACATTATCACATGGCAGTGGAGCTACTACGCTCTGTCAATGACTTCCTGTGGCTGGGAGCTGCTTTAGAAGGCCTTTGCTCTGCCTCCGTCATCTACCACTACCCTGGAGGCACGGCTGGAAAGTCAGGAGCCCGCAAACCCAGCATTTCACAGCCAGCTGACGCGGGAAAGAGGCATCGTCCAGGTGCTCTGACCACCAATGGCATCAGCGCTGACACCAGTAGTGAGATTGGGCGAGCCAAGAACTGCCTGAGCCCAGAGGACATCATTGACAAATACAAGGAGGCCATTTCTTACTACGGCAAGTACAAGAATGCAGGCGTGATTGAACTGGAAGCCTGTGTGAAGGCTGTACGAGTGCTGGCCATTCAGAAGAGAGCCATGGAAGCATCTGAATTCCTCCAGAATGCAGTCTACATCAACCTGGGCCAGCTCTCAGAGGAAGAGAAGATTCAGCGTTACAGCATCCTCTCTGAACTCTACGATCTGATCGGTTTTCACCGCAAATCAGCGTTTTTCAAGCGCGTGGCAGCCATGCAGTGTGTGGCCCCCACCATCTCCGAGCCAGGCTGGAGAGCTTGCTACAAGCTGCTGCTGGAGACCCTGCCAGGATACAGTCTGTCTCTGGATCCCAAGGACTTCAATAAAGGAACTCACCGAGGCTGGGCCGCTGTACAGATGCGTCTACTACATGAGCTGGTGTACGCCTCACGCCGCATGGGCAACCCGGGGCTGTCAGTGCGCCACCTCTCCTTCCTGCTGCAGACCATGCTCGATTTCCTCTCTGACCAAGGTCAGCCTCCTCACTTTCACTCCATGCTACTCTTCATGTCATTCCATTTTCATCCAGTGGTCGCTTGTTGGCAGCagcatattttttaa

Function

GO: NA

KEGG:

id description
K20306 TRAPPC9, TRS120; trafficking protein particle complex subunit 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110028 lncRNA upstream 6528 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 11630 27627052 ~ 27631654 (+) True G88150
TU110023 lncRNA upstream 21404 27620356 ~ 27621880 (+) True G88151
TU110017 lncRNA upstream 48714 27592630 ~ 27594570 (+) True G88145
TU109938 lncRNA upstream 233597 27408859 ~ 27409687 (+) True G88076
TU110035 lncRNA downstream 208215 27888558 ~ 27982127 (+) True G88161
TU110115 lncRNA downstream 1017535 28697878 ~ 28698085 (+) True G88225
TU110122 lncRNA downstream 1094528 28774871 ~ 28775193 (+) True G88232
TU110127 lncRNA downstream 1150563 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 1222055 28902398 ~ 28902614 (+) True G88248
AMCG00021745 mRNA upstream 6200 27632955 ~ 27637084 (+) True AMCG00021745
AMCG00021746 mRNA upstream 22992 27612761 ~ 27620292 (+) True AMCG00021746
AMCG00021742 mRNA upstream 60019 27552085 ~ 27583265 (+) True AMCG00021742
AMCG00021741 mRNA upstream 116317 27512444 ~ 27526967 (+) True AMCG00021741
AMCG00021740 mRNA upstream 238009 27397569 ~ 27405275 (+) True AMCG00021740
AMCG00021749 mRNA downstream 47450 27727793 ~ 27773527 (+) True AMCG00021749
AMCG00021750 mRNA downstream 136740 27817083 ~ 27862355 (+) True AMCG00021750
AMCG00021751 mRNA downstream 185792 27866135 ~ 27980501 (+) True AMCG00021751
AMCG00021752 mRNA downstream 300622 27980965 ~ 28033662 (+) True AMCG00021752
AMCG00021754 mRNA downstream 358535 28038878 ~ 28189161 (+) True AMCG00021754
TU109668 other upstream 1446208 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 2277307 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 3465294 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 6407204 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 6411796 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 1097972 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 1380544 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 1698232 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 1698232 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 2587059 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027578 True 2988 mRNA 0.55 19 NC_007130.7 4142529 ~ 4341690 (+)
grasscarp (Ctenopharyngodon idella) CI01000319_03582485_03652347.mRNA True 3874 mRNA 0.52 25 CI01000319 3582485 ~ 3652447 (+)