RNA id: AMCG00021749



Basic Information


Item Value
RNA id AMCG00021749
length 849
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00021749
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27727793 ~ 27773527 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAATACGAAGGTCTTCTGACCTCAGGAGTGGAGTTTGAGTCACTGCCTGCTGCCCTCTCGCTGCCTGCCGAATCGGGCCTTTACCCAGTCACACTGGTCGGAGTTCCAAGAACAGCAGGCAATATAACAGTCAACGGGTACCACACGTCCGTATTTGGGGTGACGAGTGACTGTCTTCTGGAGGGCCTACCTGGGGTGAAGACCAGTGGCGTAACTGTGGAAGTGATCCCTGCCTTACCTCGGCTCCAGCTCAGCACCTCCCTGCCTCGCTCAGCCCACACACTGCAGCCGCCCTCGGGAGAAGAGGTCTCCACCAGTGTGTCCGTTCAGCTCTTCAATGGAGAGACCCAGCAGCTCACTATTAAACTGGAGAACATTGGCACAGAAATCTTGGAGACCTTGGATGTCACCTCAAAGACCATCAATACTAAAGAGAAGCTGTTTGGGGATTTCCTGACCTGGAACCTAGAGGATACACTGTCTCAGTTTCCCCTGAAGCCCGGGCAAGTTGCAACATTAACGGTGAACATCACTGTGAAGCTGGACTTTTCGGGCCAAGAGAACCTGCTACAGGACCTCAATGACGATGGAATCAGTGTGACCGGCCTGCCTATCTCAAGCCCCCTGCGGCAGGTCCTGAAACCCCGAGCGGAGACCAAGGCTGTCAATCCCTCTGAGTCCAGCAAGACTGGAGAGTACAACCATGTCAAGTTGTTTATACTGCGTGCTGCAGCAGGCCTGTTCTGCCCTGAAGAGCCTTTTAAGTCAGTACCTCAAGGCAAGGAGAGGGGAAGTGTGTCTCTGCTCATCTCGCAGCTCGAAGGCCTGCAGGGCATATCAACTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110028 lncRNA upstream 91037 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 96139 27627052 ~ 27631654 (+) True G88150
TU110023 lncRNA upstream 105913 27620356 ~ 27621880 (+) True G88151
TU110017 lncRNA upstream 133223 27592630 ~ 27594570 (+) True G88145
TU109938 lncRNA upstream 318106 27408859 ~ 27409687 (+) True G88076
TU110035 lncRNA downstream 115031 27888558 ~ 27982127 (+) True G88161
TU110115 lncRNA downstream 924351 28697878 ~ 28698085 (+) True G88225
TU110122 lncRNA downstream 1001344 28774871 ~ 28775193 (+) True G88232
TU110127 lncRNA downstream 1057379 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 1128871 28902398 ~ 28902614 (+) True G88248
AMCG00021748 mRNA upstream 47450 27643284 ~ 27680343 (+) True AMCG00021748
AMCG00021745 mRNA upstream 90709 27632955 ~ 27637084 (+) True AMCG00021745
AMCG00021746 mRNA upstream 107501 27612761 ~ 27620292 (+) True AMCG00021746
AMCG00021742 mRNA upstream 144528 27552085 ~ 27583265 (+) True AMCG00021742
AMCG00021741 mRNA upstream 200826 27512444 ~ 27526967 (+) True AMCG00021741
AMCG00021750 mRNA downstream 43556 27817083 ~ 27862355 (+) True AMCG00021750
AMCG00021751 mRNA downstream 92608 27866135 ~ 27980501 (+) True AMCG00021751
AMCG00021752 mRNA downstream 207438 27980965 ~ 28033662 (+) True AMCG00021752
AMCG00021754 mRNA downstream 265351 28038878 ~ 28189161 (+) True AMCG00021754
AMCG00021753 mRNA downstream 432977 28206504 ~ 28212926 (+) True AMCG00021753
TU109668 other upstream 1530717 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 2361816 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 3549803 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 6491713 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 6496305 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 1004788 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 1287360 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 1605048 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 1605048 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 2493875 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile