RNA id: AMCG00021751


Basic Information

Item Value
RNA id AMCG00021751
length 414
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00021751
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27866135 ~ 27980501 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAACGTCCTGGTGAATGGGAAGCCCTGTGATTGTGATATTGTAGCTGATTGCAACGTAGGAGACCCTGTGCCCTTGGAAGTGAAGCTGACCAATGGGAGTAAGCAGGCTGTGGGCCCCTTCGCCCTGACCATCATTCCCTTCCAGGACTACCAGAACGGAGTCCACAACTACGACCTGCAAGATGCTGTCACCTTCATCGGCTCCAACACCTTCTACATTGACACGGTGAATCCTACAGAAAACTGCATCTGTGTTGGGGCTCTTCTGTTCCTCTACACTGGAGACTTTTACCTGAACATCAAGTTTCAAGATGACAACGCGGGCCGAGAGCTTCCTCTGGCCTGGTTCTGCTTACCCAGCGTTCACATCAAAGCCCTGGACCCGGCGCTCCAGCCCAACTCCAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110028 lncRNA upstream 229379 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 234481 27627052 ~ 27631654 (+) True G88150
TU110023 lncRNA upstream 244255 27620356 ~ 27621880 (+) True G88151
TU110017 lncRNA upstream 271565 27592630 ~ 27594570 (+) True G88145
TU109938 lncRNA upstream 456448 27408859 ~ 27409687 (+) True G88076
TU110115 lncRNA downstream 717377 28697878 ~ 28698085 (+) True G88225
TU110122 lncRNA downstream 794370 28774871 ~ 28775193 (+) True G88232
TU110127 lncRNA downstream 850405 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 921897 28902398 ~ 28902614 (+) True G88248
TU110140 lncRNA downstream 941128 28921629 ~ 28969948 (+) True G88249
AMCG00021750 mRNA upstream 3780 27817083 ~ 27862355 (+) True AMCG00021750
AMCG00021749 mRNA upstream 92608 27727793 ~ 27773527 (+) True AMCG00021749
AMCG00021748 mRNA upstream 185792 27643284 ~ 27680343 (+) True AMCG00021748
AMCG00021745 mRNA upstream 229051 27632955 ~ 27637084 (+) True AMCG00021745
AMCG00021746 mRNA upstream 245843 27612761 ~ 27620292 (+) True AMCG00021746
AMCG00021752 mRNA downstream 464 27980965 ~ 28033662 (+) True AMCG00021752
AMCG00021754 mRNA downstream 58377 28038878 ~ 28189161 (+) True AMCG00021754
AMCG00021753 mRNA downstream 226003 28206504 ~ 28212926 (+) True AMCG00021753
AMCG00021758 mRNA downstream 336771 28317272 ~ 28338520 (+) True AMCG00021758
AMCG00021763 mRNA downstream 525876 28506377 ~ 28509474 (+) True AMCG00021763
TU109668 other upstream 1669059 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 2500158 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 3688145 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 6630055 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 6634647 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 797814 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 1080386 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 1398074 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 1398074 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 2286901 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile