RNA id: AMCG00021752


Basic Information

Item Value
RNA id AMCG00021752
length 585
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00021752
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27980965 ~ 28033662 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACACTATGTTACATAAGGATGAGATTGCAGTACCACCTCTGCTGGAACAAAATGAATCACTGAACGATATGTGTGGTCCCAGGAAGGAACAGGAGCAGGGAGCCGGTAACAGGGAGCACAGCTGTCTCCCCCCCTCTAGCGATCATCGCCCTCGCCATCCCCACCACCACGATCTCTGCCCCTCCGGGTCGGATCGCTGCCGGAGTCTCCCCAGCTGCTGCTGCGCCTTCTTGGAGAAGCCGAGGGGACATGAGCCCCTCCGTCGCCGGTTCCTGGTGGCCATGAAGCGGCAGAACGTGCGGACCCTGTCCCTGATCATCTGCACGTTCACCTACCTGCTGGTCGGGGCGGCGGTCTTCGACGCCCTGGAGTCCGACTTTGAAATGAGGGAGAAGGAGCAGCTGGAGATCGAGGAGAAGCGTCTCCAAGGGAAATATAACATAAGCGAGGACGACTATCGCAAGCTGGAGACCATCATCATGGAGGCCGAACCTCACCGGGCTGGGGTTCAGTGGAAATTCGCTGGTTCGTTTTACTTTGCAATCACAGTCATCACCACTATAGccTCGATATTGGAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110028 lncRNA upstream 344209 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 349311 27627052 ~ 27631654 (+) True G88150
TU110023 lncRNA upstream 359085 27620356 ~ 27621880 (+) True G88151
TU110017 lncRNA upstream 386395 27592630 ~ 27594570 (+) True G88145
TU109938 lncRNA upstream 571278 27408859 ~ 27409687 (+) True G88076
TU110115 lncRNA downstream 664216 28697878 ~ 28698085 (+) True G88225
TU110122 lncRNA downstream 741209 28774871 ~ 28775193 (+) True G88232
TU110127 lncRNA downstream 797244 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 868736 28902398 ~ 28902614 (+) True G88248
TU110140 lncRNA downstream 887967 28921629 ~ 28969948 (+) True G88249
AMCG00021751 mRNA upstream 464 27866135 ~ 27980501 (+) True AMCG00021751
AMCG00021750 mRNA upstream 118610 27817083 ~ 27862355 (+) True AMCG00021750
AMCG00021749 mRNA upstream 207438 27727793 ~ 27773527 (+) True AMCG00021749
AMCG00021748 mRNA upstream 300622 27643284 ~ 27680343 (+) True AMCG00021748
AMCG00021745 mRNA upstream 343881 27632955 ~ 27637084 (+) True AMCG00021745
AMCG00021754 mRNA downstream 5216 28038878 ~ 28189161 (+) True AMCG00021754
AMCG00021753 mRNA downstream 172842 28206504 ~ 28212926 (+) True AMCG00021753
AMCG00021758 mRNA downstream 283610 28317272 ~ 28338520 (+) True AMCG00021758
AMCG00021763 mRNA downstream 472715 28506377 ~ 28509474 (+) True AMCG00021763
AMCG00021761 mRNA downstream 475967 28509629 ~ 28510035 (+) True AMCG00021761
TU109668 other upstream 1783889 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 2614988 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 3802975 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 6744885 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 6749477 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 744653 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 1027225 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 1344913 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 1344913 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 2233740 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000319_03805974_03807914.mRNA True 2012 mRNA 0.50 2 CI01000319 3805029 ~ 3808216 (-)