RNA id: AMCG00021753


Basic Information

Item Value
RNA id AMCG00021753
length 3931
RNA type mRNA
GC content 0.36
exon number 9
gene id AMCG00021753
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28206504 ~ 28212926 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGGGGCCAAAGGGTAATAAAGGAGACAGTGGTACCCCTGGACTGCCTGGCTTTTCTGGCCCACGAGGACCTCCTGGACCATCAGGTGAAATAGGCCAACCAGGAAAAGATGGGCTACCAGGCACAGCAGGAGAACGTGGATCTAAAGGAGAAAGGGGAGATCCTGGTATCAAAGGAGATAAAGGGCCGCCAGGTAGTAATGGTGTTCCCGGAGAGCCAGGAACTCCAGGGAGAAAGGGCCACACAGGGATGATGGGAATGACGGGACCACAAGGGGAGAGAGGGCCATCTGGTCTCCCAGGTCCTTCAGGACCGCCTGGGTTTCCAGGCCCCCGGGGAGAGTCTACATCACTGGAGCAAATGCGAAGACTTATCCAAGAGGAGCTTGCAAAACAGTTAGATGCCAAAATGGCGTATCTCATGGCTCAGTTACAGCCAACCCATGACCTCCTGGGCCTCCAGGTAAAGATGGTCTTCCAGGACGAGGTGGTCCCCCAGGAGAGCCTGGTAGCCCTGGGCAGAGTGGAGGAGAAGGGCCCCGAGGACCAATGGGTCCAAAAGGTGAAAGAGGAGCAAAGGGTGAAAGAGGTGAAACTGGCAttgggcagagaggagagattGGTCCACCTGGTCCTTCAGGTTCAACAGGAGCCCCTGGTTATGGGAAAGATGGGATGCCAGGGATCTCAGGCCCCCAGGGAGAACCAGGGAACCCTGGGCCACATGGTCCCCCAGGCCCCCCAGGCCCCAGTGGGCAGTGCGACCCCTCTCAGTGTGCTTACTATGCAAGTCTGGCTGCCAGGCCCCCCAACGTCAAGGGGCCTTAAAACAGCAAAAACTGTTGAGAGAGGTGCTATTTATGAACTGAGAACTATTCTGTTTTTTACATGGCCTCATTTTTGGGGTTACAAGCAATGGTTTGCTGCCAGTCagatttttttgtcttcattgtCAGGGATTATTAATATAGGGATACAAATATAACAGTGTTGTTGTGTTAAAGAGGCAGCAGAGTTTTAGGAGAACGGTCTTTGCTGTCTCAAATCGATGTCATAACTAATTGAAACTACCACCTCTTAGTTCTTAGTTTTCTCTGTTCCTACACAGGGATATTCTGAACTTTAGAATGAAATGAGGTCACCAACAAGTGGGGTGTAGAATGGGTTTAAGTTTTAGATGAAGATACTGTGTTTCCTCTTGGACAATGGGCggaatgcttttgtttgtgGTAAGACAACTGGGAGTGGGAAAAAATAGATAGTGATCTCTACATTTTATATGGAATCTTGaatccagtttgttttaaaatgtttatactgAGATGCTTACCTTAAAATATGGAAAGTGcaaatattcatttaaaaaaaaaaaaaaggttttttatCATTAACAACACTTTTTACTTCCTTTTTCAGTggaatattttttcaaatcttcatacaaaaacagaggGTTTTCATTATCAGACATACAGCAGTGGTAAAAACTAGTTAAGAGGACTGAAATACATTCTTCAGGAAAAAAACTCTTTagatatttttacattaaagaaTCAGTTTATATAGtctgtatattttactttatttgatttcttagtTGTTGCATGTCTTATTACAGTCTTTGAATTGATAATGTTCTTCTtcctacttttttattttttgttttacttatgtAAGTGGTATTAGTAACGTCTCAGTTCCTTAGCATGGCAAATCGTTTAAACAGTAGCAGtgattataatacattaaagtcTTCTCTACTAATTTGTTATGAATTTCAAAGGAATACCATAGGAGTAAAGTATCACATGCATGTCTTCAGAGCTCTGATGTTGATCAGATAGTTTAGAGTTATTGATCAGTCTCACAAAAGACCATACAATGTTTACATGCTCTTCTTGTGGTATTCAGAGGGAATTCATTATGATTTGAGGATAACTGAAAGTTGACAGAATTGCAGAACAAATACGTATAAGATATGCAACatgttagaaataaaataattgaaacatGCACGATTACATCAACTTTATCTCTTTGCGGACTAATCTCTGTAATTTAAGGTAGTACTGGATATGTTTGATTTGAAGTTGTGATGGAAATGTTACTCTCCATTTACCAATGAATGATGCCTCCACCATTGCACAAGTAGTACAAATGATCTATGAAATAATCTTTTGAAGTGTATGAAGCttttaacaaaattattaatttgcaatcagacacacacacacacaaacacacacaatcaacgCATATCATTAAGCTAAAATGAATTGCTACTCTGACTTCTTtgtaataattatcatcatcttcaaatttctttttttccctctctctgaaGACAGGATCAGTACAGGACTAAATTTGGCACTAATGGATTACCTCTATTATATGTACTGTCCAACGTTAATAATGCAATTCCTTTGGTAATAGGCATTTTGTGTGATACATTTTGAGAAGAAACATGATTTAGTTTATCATACTAATTTAGGCAACTTGTTAAAGAGACAAAAGGCCAATGTAAAGTTTTCAGACTTGTACAAAGTAAAACTTTTAGATTGCTAGCCTACCATTTTAGTTGGTTAGTGGCATAAGAAAATTATGGGCTGGGGTTGATATTTAACAggtacaatataataaaaagcattttcaagtgtattcaatattttcccatttcatgttatacatcaataaacatttaatgctaaaaagaatgaaagaaaaatatatgtaataattattataaaaagtaaAGTTAAAAATAGGGTGACAAATGCCTTTACAACAGTGTGAGAAGCCATGGAGCATTCATTGCTTTGAGCACCGCCTTAAATGGCTTTAATGTTTTGTACTGAAAGAATTGGGTGCTTTTATAAATCCTTGGTtaacaaaacaagagaaaataaactttaaagatatacaaataaaacattaaaaatcagGTGAGACACCTGCTTatcatttattaaagtattttcctaatacattttttttcattatttaaaattcataaaGGTATGCCTAGTTGTAATCTTTAGACTTAGATAGTTTGAAGTAAgtgtcttttgttttagttattgttatttctgAGAAGCTTGGTGCAGTCCCTTGTGGATTAATCTAAAGCTTAACAAAACCTGCACCAGCTTTGACTCCAGAGTGAATCTGTAATAATTCAGATGAGAGTATTACATTAATCTTTTGTACCACaagagcaatttaaaaaaacagtctCCTTCAAAATTAGGGTAACCTTCTTTTGTGCATGAATTTATAAATGTAGAGCTTGGTGTTTACACAGCAATTTGGAAGTTGACACTTACCTACCAACTTACTCCCCACAGCATCCTTACAATTGCCTGAATTTAAAGATGTACAAATgcattacactacactgtgtTGCTGGTATTCAAACAGTACAGTAAATTGGtctcttaaaagcattttagtGAAGACTGAAAAGACTacacaatactactactactactacacaataattaaacagtTTGCCTCTCTAATAGTATTCACAATTCTGTAAAGCACTCCTGtttctatatattataatggtgctaattttgaatgtttttttttttttattttatttttattttagtttggcatttttttatgtgtaacattttcttggctatgcattttaatttgctattcccgtttgaattatgtttttttgttaaattattttaaaggattattctgtatgctgttttgaaacctattttaaactTTACATACGAAACCTTACTTGTTCATAATGATAGAATGGTGCTAATTTCCTTCAAATTATGTTcctgttatatttaaaaaggcatATACTGTAATAAAGTTTGGAGCAGGTTCATTTTATAGAACAAACATTGTTTAATCccttattttgtgtgaaaaaacTGATggatttttaagaatgtat

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110035 lncRNA upstream 224377 27888558 ~ 27982127 (+) True G88161
TU110028 lncRNA upstream 569748 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 574850 27627052 ~ 27631654 (+) True G88150
TU110023 lncRNA upstream 584624 27620356 ~ 27621880 (+) True G88151
TU110017 lncRNA upstream 611934 27592630 ~ 27594570 (+) True G88145
TU110115 lncRNA downstream 484952 28697878 ~ 28698085 (+) True G88225
TU110122 lncRNA downstream 561945 28774871 ~ 28775193 (+) True G88232
TU110127 lncRNA downstream 617980 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 689472 28902398 ~ 28902614 (+) True G88248
TU110140 lncRNA downstream 708703 28921629 ~ 28969948 (+) True G88249
AMCG00021754 mRNA upstream 17343 28038878 ~ 28189161 (+) True AMCG00021754
AMCG00021752 mRNA upstream 172842 27980965 ~ 28033662 (+) True AMCG00021752
AMCG00021751 mRNA upstream 226003 27866135 ~ 27980501 (+) True AMCG00021751
AMCG00021750 mRNA upstream 344149 27817083 ~ 27862355 (+) True AMCG00021750
AMCG00021749 mRNA upstream 432977 27727793 ~ 27773527 (+) True AMCG00021749
AMCG00021758 mRNA downstream 104346 28317272 ~ 28338520 (+) True AMCG00021758
AMCG00021763 mRNA downstream 293451 28506377 ~ 28509474 (+) True AMCG00021763
AMCG00021761 mRNA downstream 296703 28509629 ~ 28510035 (+) True AMCG00021761
AMCG00021762 mRNA downstream 297530 28510456 ~ 28510815 (+) True AMCG00021762
AMCG00021760 mRNA downstream 554489 28767415 ~ 28804176 (+) True AMCG00021760
TU109668 other upstream 2009428 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 2840527 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 4028514 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 6970424 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 6975016 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 565389 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 847961 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 1165649 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 1165649 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 2054476 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile