RNA id: AMCG00021755


Basic Information

Item Value
RNA id AMCG00021755
length 1680
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00021755
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28215822 ~ 28218715 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGAATCTagtgaaaataaagaacaagtTGATGCCTTGGCTTAACTGTTGGTGTGACTTGAGGAAAAaaggaatataattaaaaatattaattatttgccAAGTATTGAatttaacatttacagaaaaatatgatGTAATGATGACATTCTTTATGTATCTATATGCTGCAAGCTATACAATTACTGATAGAAGCAGTTTACTGAAAAGGTTCAGCACCTGCAATTTCATCATCTCAGACCAGATCTCTGAGCTAACAGCATCTCTCAGGACACCAGCAGCTCAAGGGGCACCTGGCCGCCCTGGCTTAATGGGCCCACCAGGTCCTCCAGGGCCAGCTGGAAGTGCAGGACTGCCTGGATTAAGAGGTCCTATGGGCCCCAAAGGGCCCCATGGCTTCCATGGAGCACCTGGGCAGAAAGGAGAAGTTGGGGGAAAAGGAGAAAAGGGAGACATTGGAGTTGGGGTCCGTGGGGGTCAAGGACAGCCAGGCCCTGCAGGGGAGCCTGGGATTCCTGGCATTGGGAAAAATGGCCGGGATGGGGCTAGAGGCGAGCAAGGCAATCCGGGGGATCCGGGTATCCCTGGCTCTCGAGGCCCAAGAGGTCCTCCGGGGTTGTGCGATCCCTCAAACTGCATGGGACCTCCACCGATGTTCATGCCTGTGACCGGGAAGAAATCCTCCAGTATGAAAGGCCCATGAAgagaaattactttttcaaataagttaaaatagggaaatcaaaacaaaacacaccaatAAGCCGGGGTCATATCAAAGATACACTTGAAGAGACCTCAAGCGTCTTGTGTCTTCTGAAAACTAGTGAGGACACGTCAGCTTGCAGATCCTCGAGCTTTCAGATTTCAACTTTCAATGTTGCCTTATGTTTGTATGAATGAAGCTGCATGTTACCCACATACATGTTCATGTGTCCAAATCAATTATACATTCAAAGTTATTCAAAGAACAGTGAATACAGAGATTTTAGAGGGTTCAGATTTCTCATGACCATTTCAGAGCACCAGGGCTACAACTGATGAGCACATACAGAGCATTgacattcagttttatttgacctggaaaactgcaaacaagAATTGCTATTACTAAAAGCTACAATTTATTAAATATCCATAATGTGAATCTCTAATGAGAAACAGCCCTACGTTTGAAACCTCATACCATTGTATGTTGGACACTGACACTAGTGTAGCATGGGTGCAAATACATCACCCAATACACAAGACCATCATAACAATTCATTCACATAATtcctgaaagagaaaaataaatcttaagtAATGGTTCCATTGTATTCCTGTTTTGTTCATGCACTGTGCATGCTATTGTTTTAAGTATTACATTACAACAAATTCAATGGTTAATAAAGATTAAGCTTAATGGgtcttattcattatttaaaagggCATCAGTCTATCAATGGTTTCActtatttgtataataaatcaAGGTTTTCCATGATCTTCCCAAACTTAATGAAAGAAACTTCTATCCCTTGTTCTTTGCTATCAGCTATTAAACTGTGCATTGAAGTATGGAAAGGAATTtacaaacgtgtgtgtgtgtgtgtgtttcttaatgATTATTAATTGCTAATGAATCCAATGCAAATCGGGTGAGAGGAGAAGAAATTGTAACTCAAATGAGTGACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110071 lncRNA downstream 82959 28132566 ~ 28132863 (-) True G88191
TU110070 lncRNA downstream 112156 28103330 ~ 28103666 (-) True G88190
TU110029 lncRNA downstream 579102 27634904 ~ 27636720 (-) True G88157
TU110026 lncRNA downstream 584154 27627120 ~ 27631668 (-) True G88154
TU110025 lncRNA downstream 595731 27619820 ~ 27620091 (-) True G88153
TU110088 lncRNA upstream 47997 28266712 ~ 28267553 (-) True G88201
TU110116 lncRNA upstream 479163 28697878 ~ 28698110 (-) True G88226
TU110118 lncRNA upstream 542481 28761196 ~ 28761972 (-) True G88228
TU110130 lncRNA upstream 559578 28778293 ~ 28778685 (-) True G88240
TU110131 lncRNA upstream 560628 28779343 ~ 28779710 (-) True G88241
AMCG00021747 mRNA downstream 574913 27638582 ~ 27640909 (-) True AMCG00021747
AMCG00021744 mRNA downstream 628683 27584420 ~ 27587139 (-) True AMCG00021744
AMCG00021743 mRNA downstream 775560 27416270 ~ 27440262 (-) True AMCG00021743
AMCG00021738 mRNA downstream 923826 27287252 ~ 27291996 (-) True AMCG00021738
AMCG00021735 mRNA downstream 954471 27236574 ~ 27261351 (-) True AMCG00021735
AMCG00021756 mRNA upstream 15925 28234640 ~ 28239140 (-) True AMCG00021756
AMCG00021757 mRNA upstream 367461 28586176 ~ 28591802 (-) True AMCG00021757
AMCG00021767 mRNA upstream 824783 29043498 ~ 29047472 (-) True AMCG00021767
AMCG00021771 mRNA upstream 1043737 29262452 ~ 29264433 (-) True AMCG00021771
AMCG00021770 mRNA upstream 1049699 29268414 ~ 29271589 (-) True AMCG00021770
TU109843 other downstream 1295978 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 2061447 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 2119038 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 2307817 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 2809284 25403650 ~ 25406538 (-) True G87674
TU110132 other upstream 563087 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 850486 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 1511362 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 2118868 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 2659133 30877848 ~ 30888212 (-) True AMCG00021820

Expression Profile