RNA id: AMCG00021757


Basic Information

Item Value
RNA id AMCG00021757
length 594
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00021757
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28586176 ~ 28591802 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAACTTTGTTGGTAAACTCCTTGGGCCACGTGGAAACTCGTTAAAACGGCTACAGGAAGACACCCTCACAAAGATGTCAATCCTTGGAAAAGGTTCcatgagagaaaaagaaaagGAAGAAGAGCTTCGAAAGAGCGGTGAAGCCAAATACCAGCATCTGAACGAGGACCTCCACGTACTTATTGAAGTGTTTGCTCCTCCAGCAGAAGCGTATGCCAGAATGGGACATGCACTTGAGGAGATCAAAAAGTTTCTCATTCcaGATTACAATGATGAAATCAGACAGGCACAACTTCAGGAGCTCACGTATCTAAATGGAGGGTCTGAAGATGCAGAAGTGCCAGCTGTGAGAGGGAAGACAGTAGCGCGAGGAAGAGGAACACCCGCCCCTGGCCTGCCCAgGAGTCGAGGAGGTGTTGCCCCACCCCAGGCCGTGGTCCCGCGTGGTGCCCCCGCGCCCAGAGGAGCACCACCAGGTAGAGTTCCTGTAACCAGAGGACGAGGCGTACCTGCACAGAGAGCTCGAGGAGCACCCCCCACTACTGGATACAGACCTCCTCCTCCACCGGCGCAGGACACATATGGAGAATAT

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14942 KHDRBS3, SLM2; KH domain-containing, RNA-binding, signal transduction-associated protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110088 lncRNA downstream 318623 28266712 ~ 28267553 (-) True G88201
TU110071 lncRNA downstream 453313 28132566 ~ 28132863 (-) True G88191
TU110070 lncRNA downstream 482510 28103330 ~ 28103666 (-) True G88190
TU110029 lncRNA downstream 949456 27634904 ~ 27636720 (-) True G88157
TU110026 lncRNA downstream 954508 27627120 ~ 27631668 (-) True G88154
TU110116 lncRNA upstream 106076 28697878 ~ 28698110 (-) True G88226
TU110118 lncRNA upstream 169394 28761196 ~ 28761972 (-) True G88228
TU110130 lncRNA upstream 186491 28778293 ~ 28778685 (-) True G88240
TU110131 lncRNA upstream 187541 28779343 ~ 28779710 (-) True G88241
TU110133 lncRNA upstream 193364 28785166 ~ 28785661 (-) True G88243
AMCG00021756 mRNA downstream 347036 28234640 ~ 28239140 (-) True AMCG00021756
AMCG00021755 mRNA downstream 367461 28215822 ~ 28218715 (-) True AMCG00021755
AMCG00021747 mRNA downstream 945267 27638582 ~ 27640909 (-) True AMCG00021747
AMCG00021744 mRNA downstream 999037 27584420 ~ 27587139 (-) True AMCG00021744
AMCG00021743 mRNA downstream 1145914 27416270 ~ 27440262 (-) True AMCG00021743
AMCG00021767 mRNA upstream 451696 29043498 ~ 29047472 (-) True AMCG00021767
AMCG00021771 mRNA upstream 670650 29262452 ~ 29264433 (-) True AMCG00021771
AMCG00021770 mRNA upstream 676612 29268414 ~ 29271589 (-) True AMCG00021770
AMCG00021774 mRNA upstream 681290 29273092 ~ 29275349 (-) True AMCG00021774
AMCG00021773 mRNA upstream 689754 29281556 ~ 29285963 (-) True AMCG00021773
TU109843 other downstream 1666332 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 2431801 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 2489392 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 2678171 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 3179638 25403650 ~ 25406538 (-) True G87674
TU110132 other upstream 190000 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 477399 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 1138275 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 1745781 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 2286046 30877848 ~ 30888212 (-) True AMCG00021820

Expression Profile