RNA id: AMCG00021758


Basic Information

Item Value
RNA id AMCG00021758
length 4023
RNA type mRNA
GC content 0.45
exon number 16
gene id AMCG00021758
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28317272 ~ 28338520 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATCTAGTTCTACCTCTGCTTGTGTTGTTGACTGCACTGTGTTCAGCAGGATATTCCAGATCCTGTACAGAAATGAAGAGATAGCAGTGAACGACACTATGAACTTCAAGGTTCATCTGCTGCTGGATGGCGAGAGAGTAGAAGAAGCTTTGAGTGAAGTTGATTTCCAACTAAAACTAGACCTGCATTTCACTGACAATGAGCAGCAGTTGAGTGATATTGGTGCTGTCCCTCTAATAAGCAGTCGGACACTGGGTCTTCACTTTCACCCGCGGAGAGGCCTGCACCATCATGTCCCCGTGATGTTTGACTACTTCCATCTCTCTGTGATCTCCGTCTCCATCCATGGTTCACTGGTTGCCTTACATCAACCATTGATCAGTTTTGCTCGCTCAGGGAAGGGCTCCTGGTTGGGAAAAGGTTCTCCAGAGAATGGAGCAGATCAGTCTGCCATGTCTTTAGAGACCCTCATGTTTGGGGCAGGATACTGCAAACCTGTTTTAACAGAGGGCAGCTTTTATGTTCCATCTGAAAACTGCATGCAACGTGCATACACATGGCACAGAAGACTGTGTCGTCTCTTGCTGGCTGCACACAGAGGTCTGCGTACCTATTTTGTCGGTTTAATGAAAGAGATCCCGGAGGTGCCTCAAGTGGAAATAGAGGAGCTTCCGATTGAGGAAACACTAACCCAGCTTTCAATTGAACTACagGTACAGAATAGTCATGATAAAGTTGCTGAGCAGATCAGTAGAGATTTAACTCAGCTCTGTTCCCATCTCACGGCTCTATGGAGTCAGTTTCTTGAGGCCGTTGTTCCTCAGGCAGAAGTCATGTCTTACTTGGTTCAGGAGCATCACACATTAAGGGTTAGAAGATTTTCAGAAGCATACTTTTTTACAGAACATCCCAAAATTGCATCTTTAACATTTCAAGAGGAGCTaataCAGAGACACAGCCAGATTGCGTCAGAGGTCAGGAGCTCAGAGTATCTCACACGGATGCCCCCTTTACCTGTGGAGTGTCTGGATATAGACGGGGACTGGAATACTCttccaattatttttgaagACAGATATGTAGAAAACCCCAGAGCAGatcAAAATTTGGACAGTGTTACTTCAGCAGCACCAATTGTGCCATCTTCTCCCGAAAGTAATGAGACAGCATCGTCAGACACTGAAGCCTCCGCAGTCACTGCCAATACTGCATGCATGACCGCTGAGCATGCCTCAGAAACACTAGCAATAAATGAAAACCTTTCCCAGAGTGATGGTTCCATAGACTTACCAACTTATGTTTCTTTGATTGAACACTGCGAAAGCAATAATAACCTTAAGGAGTTTGATCCCTCAGAAACAAATTCCAGGGATTCTCAGCTTAAGGAACCAATTCCCTCAGATCTAATTTTTGATGAAACGGATGAACACACTAACACGGGTTTGACGTATATTGAAGTCAGGCCTAGTGATATGGATCCATACAGAGGGGAGGTTGTACTGGTAGTAACATCAAACCAAACTGCAGGCTTAGACCTAAACAGCTCTGACATTGCAGACATAGCCTCTCATACTGTGGATCTGGAAGAGAATGGACCGGAAAGCAAAGTGTGtattaaaactgaacaaaatgacacaaatgaAACTGAGGAAAATGTATCTGAATTGAATGTTTCAGACAGCAGCAATTCAAAAGTGACAACGCCACATCCTGTGTTCAAGGTTTACCGGAACGAAGACATGCTGTTAACCAGCTTGTCTGTCGTGGATTACCCAGCCTCAGAGCAGTGCAGGACGCCAACTGCGTCTAGTGAATGTGACACAGATAAAGAGGACATGCACATAGCAGGCAAGGGACGCTGTAGCAGCAGCTCCAAGGTAATGAAGAGATCCTCCTCTGTTATTTCGGATTCAGGGATTGAGAGTGAGCCCAGCTCTGTCGCTTGGCCGGATGTGCGCCTCAGACCTCAGGACATCTCTGGTGATCGGGACATTTTGCAGCACCTGGTTAGGAGACATGCAGTACATCGCAACTCCCTGGAGGGCTGTCAGACGGAGAGCAATGCAAGTTTACCAAGTGGAATACAGGCCTCCTTGACTTCTATAAGCTCTCTGCCCTACGAGGAAGAGGAACAGGTGGAGCTCAGTAAACTGACAAAGTCAGTGTCTGCTCCACAGATCAGTAGTCCTGAGGACACCGAAGAGGACCAAGAAACTGCCAACAAGGATCCGCAGTCAGAAAGTGATATAACAAGTGACTCTGATCCACAAAGTTATGCAGCTTTGGTTAGAAATGCAGGCAGACAGTTTGATCATCCTGTTGGACACAATTCTTCTCTAGATGATATTCTAGAAGGGGATATGCCTGACGGTGCGGTATTTAATTGGGAAACCTATTCAAATCAGCAGGAACGCATGCCCTACATGGAGAGTTATGACAGTTCAAAAGATGCTGAAGGACCTGCTGAGCTAGAACTACAGCAGAGCCAGGTGAACCTTCAGGAAGCTGAACTGGTGTTGAGTAGTGTACCAGAGGTTTTGCTTTTTCAACAATTTGTGGATGAAGGTGGTCTCCATGAGTCAGTATTTTCTGAATTAAGTGGGAGTCCAGGGAATATCAAAAATGACAACGTGATCAAATATGAGAATACACTCGCATATAGCCAAGACTCACCACACTGCAGTTATGAAGCTCCAGTGCCTGACCAGAAAGAATACCTTTTGAATATAGGAGAGACTGGGGCATCGTTgtgcaacacagacacagattcGGCTAGTGAGGCCAACCACAATTTCCATCAAATTGAACTGAATGAGCAGGTTACAGTGGATCAAGTTTTGCTTGATCGAAATAAGAGCCAACATAAAAGCCAAGATACTGATAAAGAAAACCACAATAGTATTAAGACAGATGTCTTTGATCATCAGGCTTTTGCAGGGCAAGGAAAATCTTCAAAAATCCCAAGTTCGGGGTTGGCGTTTGTAAACAGGAAAGTGGTGGAAGTGGTGAATTTGTCAGTGTCGTGTGCCCCGACATGCCTGCCATTTTCATCTGTGCTCAGAGATTCTCCTTCTGTCAGTGGGATTTCGGTGAGGCAAGCGACATCGCCCATCACTAGACAGCCCCTTGGATCCTTTGGTGTTGTATCTTCCAGTTCCTTTTGTACTGATGAGGAATCCAATGAGAGAATGCTAAATTTCTATAAAGCCAAAGACGACTTGCTGAAAGAGTTGAACTTTCAAGGCACTATCTACAGTGATCTACCACAGCTAGCTTCTGATGTGCCATATTTTCCACCTGAGGAAGATGATGAGGAATTTGATGATGGGATTCACTTGGTTGTGTGTGTCCATGGGTTAGATGGAAACAGCGCAGATTTACGTCTGGTGAAGACTTTCATTGAGCTTGGTCTCCCTGGATCCAGACTCGACTTCTTAATGTCAGAAAGGAATCAGACTGACACGTTTGCTGATTTTGACACAATGACGGACAGACTACTGGATGAGATCATTCAGCACATTCAGCTTTATAATCTCACTATAGCCAGGATAAGTTTCATTGGACACTCCTTGGGCAATGTCATAATTCGGTCAGTACTGACCCGCCCGCGCTTCCGGTACTACCTGAGTAAGCTCCACACATTCCTCTCCCTGTCGGGGCCCCACCTGGGAACGCTTTATAACAACAGCACCTTGGTCAGTACAGGGCTGCAGTATTTTAAGAACGTCGTGTTAGTGGCGTCTCCACAGGATCGCTATGTTCCCTTCCACTCTGCTCGGATAGAGATGTGCAGAACGGCTTTGAAAGACAGAACCACAGGTCCGGTGTACACAGAAATGATTAATAATCTGCTTCAGCCCTTATTGGATGCCAAGGACTGCAAACTGATACGTCAGAATGTATTCCACGCGCTGCCAAATACCGCCAATACTCTAATCGGAAGGGCTGCTCACATTGCTGTGTTAGATTCGGAGCTGTTCTTGGAGAAATTCTTTTTGGTGGCTGGacttaattactttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110035 lncRNA upstream 335145 27888558 ~ 27982127 (+) True G88161
TU110028 lncRNA upstream 680516 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 685618 27627052 ~ 27631654 (+) True G88150
TU110023 lncRNA upstream 695392 27620356 ~ 27621880 (+) True G88151
TU110017 lncRNA upstream 722702 27592630 ~ 27594570 (+) True G88145
TU110115 lncRNA downstream 359358 28697878 ~ 28698085 (+) True G88225
TU110122 lncRNA downstream 436351 28774871 ~ 28775193 (+) True G88232
TU110127 lncRNA downstream 492386 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 563878 28902398 ~ 28902614 (+) True G88248
TU110140 lncRNA downstream 583109 28921629 ~ 28969948 (+) True G88249
AMCG00021753 mRNA upstream 104346 28206504 ~ 28212926 (+) True AMCG00021753
AMCG00021754 mRNA upstream 128111 28038878 ~ 28189161 (+) True AMCG00021754
AMCG00021752 mRNA upstream 283610 27980965 ~ 28033662 (+) True AMCG00021752
AMCG00021751 mRNA upstream 336771 27866135 ~ 27980501 (+) True AMCG00021751
AMCG00021750 mRNA upstream 454917 27817083 ~ 27862355 (+) True AMCG00021750
AMCG00021763 mRNA downstream 167857 28506377 ~ 28509474 (+) True AMCG00021763
AMCG00021761 mRNA downstream 171109 28509629 ~ 28510035 (+) True AMCG00021761
AMCG00021762 mRNA downstream 171936 28510456 ~ 28510815 (+) True AMCG00021762
AMCG00021760 mRNA downstream 428895 28767415 ~ 28804176 (+) True AMCG00021760
AMCG00021759 mRNA downstream 489466 28827986 ~ 28830377 (+) True AMCG00021759
TU109668 other upstream 2120196 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 2951295 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 4139282 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 7081192 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 7085784 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 439795 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 722367 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 1040055 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 1040055 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 1928882 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile