RNA id: AMCG00021768


Basic Information

Item Value
RNA id AMCG00021768
length 1941
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00021768
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29076101 ~ 29095261 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aAAACAGCCcgaattgtatttaatttttttccccttgatttgtttggttttctgttaggatttttggATCCAGAAAAGAAGCTCTTCTCTCATCGTATTTTGTCCAGGGATGAATGCATCGATCCCTTCTCCAAAACGGGGAACCTGAGAAATCTGTTTCCCTGCGGTGATTCTATGGTTTGTATTATTGATGACCGGGAAGACGTCTGGAAGTTTGCACCGAACCTCATCACGGTCAAGAAATACATCTATTTCCAGGGCACGGGTGACATCAATGCACCACCCGGCTCAAGGGAAGctcaaatgagaaaaaaagCTAATCATGTTAACAAGACTGCTGAGAATCCGGAGTCGACAGTATCTTCATCTAAGGACGGTGAGGAGGTCAGGGTCCCATCAGTAGAGGAGCAGAGCAACGGTCTCAGGAAACACGGCAAAGAGCGGAATGGAAACCAAAGCACAGCGGCCGACGACGAGCTGTCCTCCAAGTGTGAGGCTGCCAGTTCTCAGGGCAAAACTAACGACCGGATACAGGGGGATGGGGATGTGAAGGGGGACACTTCACGGGTAAGCGACGCAACGAATGTAAAGGAACAGCTAGAGCAGGACAGTGACAGGACGGGGCCAGAGAAGCCTGGGACGAAAGGCACGGGTGGCTCTGGCAATGACTTGGACTTTGACCTCTCCAGCGACAGCGACAGCGACTCCGGCACCGGGAAACCGTCGTTGTCCGACAGCGAGGGGGAGGAGAAGCGGAGCTGGAGGAAAGACAAGGATCATGTGTCGTCGGAGCAGCACAAGGCCACCGAGGCTGGAGTGCCAGCTGGGGAAAACCATTCCGGCCAGGAGGCTCTGGGGGAGATCCAGCTGAACCCAGAGCAGGATAGCCTAGGGGAGCTGGGGAACGGCTGTCCCGAGAAGAAGGAAGCTGAGACGGAATCGCAGAACAGCGAGCAGTCTGGCGTGACCATTGGAGAAGAGTCTTTGGATCAGAGcatggaggaagaggaagaggaagaggtggACTTAGACAAGGATGATCACTTGATTTACCTGGAGGAGGTCCTGGCCCGGATCCACACGGAGTACTATGCCAAGTATGAGTGCTACCTGAAAAAGGCCTGTGCTGAGACGCCCGACATCCGCAAGATTGTTCCTGAGCTGAAGAGTAAAACTCTGGCAGGCACCAACATTGTGTTCAGTGGCCTGTACCCCACGAACTACCCCATGGAGAGGACGCGGGAGTGCTACCATGCCAAGGCTCTGGGGGCAAAGATCAGCAAACACCTAGTGCTCAATTCCAAAGACCCCAACTGCACAACACACCTCATCGCAGCCCGGGCTGgTACGGAGAAGGTACGACAGGCCCAGGGGTGCAAACACCTATACGTGGTCAATCCTGACTGGTTGTGGGGCTGCTTGGAGCGCTGGGAGAAAGTGGAGGAGCAGCTCTACCCACTGAAGGAGGACTACATCAAAACACAGAGAAGCAACAGTCCTGCTACGTTTCCCGATATACAGAGTGCTTTTCAGACGCCCCTCTTTCACCCCACGCCCATCCACCCAAAGACTCCAGCTGGGCCCGAGGTGCGGACGTACGACCATCTCACAGGAAAACTGATCAGAAGAGGCTCTCAGACGTCCCGGCAGCCCCCCTACATTCAGGCCCCGGGACCCCCGGTCTCGCTGGCTGTGCATGGCGAACAGTCTTCCTTCAGGGTGGTGCAGCCTCAACAGCCGGACGAAGAGTTGCCAGGCTCCAGCCGAGATGAGGAGCAGCCGGGGCCCTCTCGCAGGAAAAGGCAGCCCAGCATGTCGGAGACCATGCCACTGTACACTCTGTGCAAAGAGGATCTGGAGAGCATGGACAAAGAGCTCGAATCAGACATCACAACTTGTCAGATTTATGAAGTGGAGAGAGggcaagaaaaaagaaagaaa

Function

GO: NA

KEGG:

id description
K15732 CTDP1, FCP1; RNA polymerase II subunit A C-terminal domain phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110140 lncRNA upstream 106153 28921629 ~ 28969948 (+) True G88249
TU110138 lncRNA upstream 173487 28902398 ~ 28902614 (+) True G88248
TU110127 lncRNA upstream 244778 28830906 ~ 28831323 (+) True G88237
TU110122 lncRNA upstream 300908 28774871 ~ 28775193 (+) True G88232
TU110115 lncRNA upstream 378016 28697878 ~ 28698085 (+) True G88225
TU110198 lncRNA downstream 169566 29264827 ~ 29268282 (+) True AMCG00021772
TU110201 lncRNA downstream 175296 29270557 ~ 29271545 (+) False AMCG00021772
TU110206 lncRNA downstream 183916 29279177 ~ 29280833 (+) True G88306
TU110207 lncRNA downstream 202576 29297837 ~ 29298080 (+) True G88307
TU110209 lncRNA downstream 212618 29307879 ~ 29315559 (+) True G88308
AMCG00021766 mRNA upstream 34160 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021765 mRNA upstream 54360 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021764 mRNA upstream 70204 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021759 mRNA upstream 245724 28827986 ~ 28830377 (+) True AMCG00021759
AMCG00021760 mRNA upstream 271925 28767415 ~ 28804176 (+) True AMCG00021760
AMCG00021769 mRNA downstream 115016 29210277 ~ 29223312 (+) True AMCG00021769
AMCG00021772 mRNA downstream 171177 29266438 ~ 29275347 (+) False AMCG00021772
AMCG00021779 mRNA downstream 286824 29382085 ~ 29385323 (+) False AMCG00021779
AMCG00021781 mRNA downstream 510879 29606140 ~ 29648683 (+) True AMCG00021781
AMCG00021782 mRNA downstream 658150 29753411 ~ 29782570 (+) True AMCG00021782
TU110172 other upstream 10762 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 297368 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 2879025 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3710124 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 4898111 24174509 ~ 24177990 (+) True AMCG00021656
TU110265 other downstream 283314 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 283314 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 1172141 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1293576 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 5831292 34926553 ~ 35041288 (+) False AMCG00021881

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000320_00163150_00192941.mRNA True 3063 mRNA 0.51 14 CI01000320 163021 ~ 192941 (-)