RNA id: AMCG00021769


Basic Information

Item Value
RNA id AMCG00021769
length 1587
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00021769
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29210277 ~ 29223312 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTTACTTTCTAGCAGCACAGAACGCCAGTTCACCTCTTTCACCTTTAACCCACTGGAGAACTTGCATGAGATCCGCACCAAGAAAGGTGTCTTCTACAAAAAGGCCAAACTCCTCAAACCGGGAGAAGACTATTACCGCATATCGCACTTGGAGGACAACAGGACCCGTTTCGTGATCATCAACGTGGGCGGGATCAAGTACCAGATCCCCTGGACCACACTGGATGAGTTTCCTCTGACCCGGTTGGGAAAGTTAAAGACTTGCAACAACTATGAGGAGATCATGGACGTCTGTGACGACTAtgatgtgagctgcaatgagtTCTTCTTCGACCGCAACCCAAGTGCCTTCAGAACCATCATGACCTTCTTAGCAGCAGGAAAGCTGCGTCTGCTGCGGGAGATGTGTGCCCTGTCTTTCCAGGAGGAGCTCCTCTATTGGGGCATCGAGGAGGAGAACCTGGAGTGGTGTTGCCTGAGGAAATTGCGGCAGCGGGAGGAGGAGTACAGCGAGGCAcgcagagaggaggagaacgAGCTGGCCTCCCCCCCGAGTGAGGAGCCGCCCCCCAGTGCCTTCTCTGATGACGGACACATGGGGGGCTACATGAGGAAGCTCAGGGACATGGTGGAGAACCCACACTCTGGTCTCCCAGGGAAGATCTTCGCCTGCCTCTCTGTAATTTTTGTGGCCATCACTGCCGTCACCCTGTGCATCAGCACCATGCCGGATATccgagaggaggaggagaggGGTGAGTGCTCCCAGAGGTGTTACAACATCTTTGTCCTGGAGACGGTGTGCGTGGCTTGGTTCTCCCTGGAGTTCGTGCTGCGCTTCATCCAGACGCAGAGCAAGTGCGTCTTCCTGAGGACCCCACTGAACATCATCGACGTAATGGCCATCCTGCCCTACTACATCACCCTCATTGTTGACTCCTTCTCGGTGGGGGGGAGGAAGCCCGGTGGCTCTGGGAACAGCTACCTGGAGAAGGTGGGCCTGGTTCTGCGTGTTCTCCGGGCCTTGAGGATTCTCTATGTGATGAGGCTGGCCCGCCACTCTCTGGGCCTGCAGACACTTGGCCTCACCGTGCGACGCTGCACAAGGGAGTTCGGGCTGCTCCTGCTGTTTCTGTGCGTCGCCATGGCCCTCTTTTCTCCCTTGGTGTTTCTGGCCGAGAGCGAGCTGGGAGCCAAGCAAGAGTTCACCAGCATCCCAGGCTGTTACTGGTGGGCGGTGATTTCTATGACCACGGTGGGCTACGGTGACATGGTCCCCCGTAGCATCCCCGGCCAGGTGGTGGCGCTCAGCAGCATCCTGAGTGGGATCCTGCTGATGGCCTTCCCCGTCACGTCCATCTTTCACACGTTCTCCCGCTCCTACGTGGAACTCAAGGAGGAGCAAATCAGGGCGTCCAGACAAAAGCCAGACTCGCAGGATAGCACCAAATCCCAGAACAGCGAGGATTCCCAGGAGATGGACAGCAACTTCCAAGGGATTATAGAATCCATGGCTCACAGGAAGTCCATAGCAATGGCCACACAGAAGGTCCTTGAAAGCAGGCTGCTGGAAAAGAGCTAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04900 KCNG1, KV6.1; potassium voltage-gated channel subfamily G member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110140 lncRNA upstream 240329 28921629 ~ 28969948 (+) True G88249
TU110138 lncRNA upstream 307663 28902398 ~ 28902614 (+) True G88248
TU110127 lncRNA upstream 378954 28830906 ~ 28831323 (+) True G88237
TU110122 lncRNA upstream 435084 28774871 ~ 28775193 (+) True G88232
TU110115 lncRNA upstream 512192 28697878 ~ 28698085 (+) True G88225
TU110198 lncRNA downstream 41515 29264827 ~ 29268282 (+) True AMCG00021772
TU110201 lncRNA downstream 47245 29270557 ~ 29271545 (+) False AMCG00021772
TU110206 lncRNA downstream 55865 29279177 ~ 29280833 (+) True G88306
TU110207 lncRNA downstream 74525 29297837 ~ 29298080 (+) True G88307
TU110209 lncRNA downstream 84567 29307879 ~ 29315559 (+) True G88308
AMCG00021768 mRNA upstream 115016 29076101 ~ 29095261 (+) True AMCG00021768
AMCG00021766 mRNA upstream 168336 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021765 mRNA upstream 188536 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021764 mRNA upstream 204380 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021759 mRNA upstream 379900 28827986 ~ 28830377 (+) True AMCG00021759
AMCG00021772 mRNA downstream 43126 29266438 ~ 29275347 (+) False AMCG00021772
AMCG00021779 mRNA downstream 158773 29382085 ~ 29385323 (+) False AMCG00021779
AMCG00021781 mRNA downstream 382828 29606140 ~ 29648683 (+) True AMCG00021781
AMCG00021782 mRNA downstream 530099 29753411 ~ 29782570 (+) True AMCG00021782
AMCG00021784 mRNA downstream 565422 29788734 ~ 29804747 (+) True AMCG00021784
TU110172 other upstream 144938 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 431544 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 3013201 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3844300 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 5032287 24174509 ~ 24177990 (+) True AMCG00021656
TU110265 other downstream 155263 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 155263 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 1044090 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1165525 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 5703241 34926553 ~ 35041288 (+) False AMCG00021881

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025315 False 2356 mRNA 0.51 3 NC_007129.7 14477740 ~ 14530633 (+)
grasscarp (Ctenopharyngodon idella) CI01000320_00001038_00027798.mRNA True 2135 mRNA 0.50 2 CI01000320 544 ~ 27798 (-)