RNA id: TU110198


Basic Information

Item Value
RNA id TU110198
length 2170
lncRNA type sense_over
GC content 0.44
exon number 4
gene id AMCG00021772
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29264827 ~ 29275347 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAAGGGATTGGATAACACTTGAAACTAGAGCTCATTCTTTGCCAGCTAACGTCAGGAGTCCATCCCAAAGCCAGGTCAATTAGCCAGACAGTGATCAAATGCCACACCGtaacatgcatttcaataaGCAGATGCAAGAAGCAGGAATGAAGCTTTCATCCAACATAATCAAATGACTTCGCTGACATGATTCATTGAAAGCTGCGTTAAGGACGGAAGCCTGAGTGATAGCCATGCTTTGTGTTTACATGCGCACACACCGTCCTGGAGCAGGTTGTGTCCATCTCCTGGGACTTCTACATTGGGACTCggtttgtgtgatttatttgggtgggggggggtcgcATTTCGCTTACCTCATCGCAGTCACACAGACTCCTCGGCGGTATCAGCACAATGATGCGGTCGCTTCCGTTTTTATGTCCATCCCAGCATCGTCATGAAACGGTATCCGCTTTGTGGAGGTGTCCCGGTGTCGGCTGCTGCATCTCCCTCTGGTTTGCAGActctggtgggggggggaagttACTTACCCAGGGAAGTGGTGGTCGCCAGCCCTAGCCGCCCCCTCGCCCCGCCGCCCCACAGAGCCCAGGGACGCTTCCCAGTTATGCGCTCGTGACGTCACGACCAGGGTTTGACAACACAGGCCGACGCGCTTCTGCCGCCGGGTCCTAAATTGTGTTGAGTTCATGTCACGACGTGGCCATACGTGCCACAAACTCTGACAATATACAGTTAAACGCTCAAACTAAACAAGGAAAGAAAACGCCTTAGTTaacagtttgtatttgtataatgttttgtctaataatacaaatctaatcACTAGTTAAACTTTAAAGCCACTTGGAAACTCAATCGCAAACACAATCCTTATGCACTATGCTAGACCATTCCACAGCACTGggttaatgtattaatgtaagtAAATGatcaattattgttattattattattattattattattattattattatgaataatgataatgataatacacTTCCAATCCCAAGAGAGGGTTAAATGTGGGAACACAGAAGTGCCTGAAGGAAGGAAGCGCGTCAGTTACCTGTTTAACCCGATCAGCCTGGGACAGGGCGGCCAGTGCTATTGAAACATCGGACAAAACTTTATATCTTCAACTTATTCATGAACACTTATGCTTGGTTTGTGTTCATTGAATTTCCGAGATTAGAAATCGAAATGTTTTGGCAGACACAAGTTGTTTTGTAGGTATGTGTGAACTTTTAACTGCGTATGTGACATTGGATCCACCGATgatccaaaataataattacataaccCATTCGATTTGATACTTGACGTTTCACCATGTTTTTTGGTTATGCATTTCGatataatttgacacaaaaagCATAagcataatatatgtatttactgatAGTGTACATGTGCGACCGATGGAAGAGGACTCACACTAGCTGTTTCTGCGTGAGAACAGTCAGGGTCAGTagcgcagctctgcgcagatctgcagctGCGTTGTTGCCAGGCTCTTGTTAGGACGCTTGCTGTGACAAACCGTCCGTTTCTGTGGCCGACAGTGGCAAGCAGACCTCTGAtcaagagagagacagcacCATGGCAGaaagcaaccccaaaacaaCGCAGGACCTATCAGATTATatGGAAACAATGATGCAGAACCTACAAAGCAAGTTTCAAGCTATGTCTGACCAGATTGTCTCAAGAATGGATGAAATGGGAAACCGCATCAatgctctggaaaaaaatgtggCAGACCTAATGACGCAGGCAGGAATGGAGGAGCCACAGGCAGATATCAAATACAACTAGAGAACGATGATGTTGtgcacagtgcagtgacaggCTGTGGTGAACAGAAGGACACAATGCTGCAACACTCAGGAAAACTCACCCACAGACAGCGCAAGGATTAGTCCTCTTCTACTCCATCAACAGAGGTGCTCAGAAGAGGATGCTTCCAGTAGTCCTTCTGGACATTTCAACAGTGTTCTCAAACTTTTCCACATTCATCATTATAACAAAAAGGTGGTTTAAACTTAGTTTAGAATTATAACACATGATTGCAGACTTACTGTGAACTCAAATCTTATGTTATATTGTTCaaactcaaaataataaaaatgtattaaaagcgTTTtggtttttataattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110140 lncRNA upstream 294879 28921629 ~ 28969948 (+) True G88249
TU110138 lncRNA upstream 362213 28902398 ~ 28902614 (+) True G88248
TU110127 lncRNA upstream 433504 28830906 ~ 28831323 (+) True G88237
TU110122 lncRNA upstream 489634 28774871 ~ 28775193 (+) True G88232
TU110115 lncRNA upstream 566742 28697878 ~ 28698085 (+) True G88225
TU110201 lncRNA downstream 2275 29270557 ~ 29271545 (+) False AMCG00021772
TU110206 lncRNA downstream 10895 29279177 ~ 29280833 (+) True G88306
TU110207 lncRNA downstream 29555 29297837 ~ 29298080 (+) True G88307
TU110209 lncRNA downstream 39597 29307879 ~ 29315559 (+) True G88308
TU110262 lncRNA downstream 108239 29376521 ~ 29388601 (+) True G88352
AMCG00021769 mRNA upstream 41515 29210277 ~ 29223312 (+) True AMCG00021769
AMCG00021768 mRNA upstream 169566 29076101 ~ 29095261 (+) True AMCG00021768
AMCG00021766 mRNA upstream 222886 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021765 mRNA upstream 243086 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021764 mRNA upstream 258930 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021779 mRNA downstream 113803 29382085 ~ 29385323 (+) False AMCG00021779
AMCG00021781 mRNA downstream 337858 29606140 ~ 29648683 (+) True AMCG00021781
AMCG00021782 mRNA downstream 485129 29753411 ~ 29782570 (+) True AMCG00021782
AMCG00021784 mRNA downstream 520452 29788734 ~ 29804747 (+) True AMCG00021784
AMCG00021785 mRNA downstream 547208 29815490 ~ 29830397 (+) True AMCG00021785
TU110172 other upstream 199488 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 486094 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 3067751 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3898850 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 5086837 24174509 ~ 24177990 (+) True AMCG00021656
TU110265 other downstream 110293 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 110293 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 999120 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1120555 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 5658271 34926553 ~ 35041288 (+) False AMCG00021881

Expression Profile