RNA id: TU110201


Basic Information

Item Value
RNA id TU110201
length 302
lncRNA type sense_over
GC content 0.42
exon number 2
gene id AMCG00021772
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29264827 ~ 29275347 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTCAGCAATACTATATAACACTTCATCCATTTTCATGCAGGTAGGATCCCAGTCATGGCCAAACCTGATGACGACCACTCGATCCTCCTCAGAGAGGATGGCCTGGTCCACCTGCCAGCCATTGTGGAGATGAGGTAACATATACGACATCTTGAGGCAAGGGGAGACTTATTtcctaaaaagaaaaactcaaagacaaatatgaattaaaaacaatattttcgcGGTCCCTTTTCACGAactttaaaatgatgaaaaataaaaacaaatgtgcctgATCCTGCTACCTTCCCAGAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110198 lncRNA upstream 2275 29264827 ~ 29268282 (+) True AMCG00021772
TU110140 lncRNA upstream 300609 28921629 ~ 28969948 (+) True G88249
TU110138 lncRNA upstream 367943 28902398 ~ 28902614 (+) True G88248
TU110127 lncRNA upstream 439234 28830906 ~ 28831323 (+) True G88237
TU110122 lncRNA upstream 495364 28774871 ~ 28775193 (+) True G88232
TU110206 lncRNA downstream 7632 29279177 ~ 29280833 (+) True G88306
TU110207 lncRNA downstream 26292 29297837 ~ 29298080 (+) True G88307
TU110209 lncRNA downstream 36334 29307879 ~ 29315559 (+) True G88308
TU110262 lncRNA downstream 104976 29376521 ~ 29388601 (+) True G88352
TU110266 lncRNA downstream 107030 29378575 ~ 29382273 (+) True AMCG00021779
AMCG00021769 mRNA upstream 47245 29210277 ~ 29223312 (+) True AMCG00021769
AMCG00021768 mRNA upstream 175296 29076101 ~ 29095261 (+) True AMCG00021768
AMCG00021766 mRNA upstream 228616 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021765 mRNA upstream 248816 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021764 mRNA upstream 264660 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021779 mRNA downstream 110540 29382085 ~ 29385323 (+) False AMCG00021779
AMCG00021781 mRNA downstream 334595 29606140 ~ 29648683 (+) True AMCG00021781
AMCG00021782 mRNA downstream 481866 29753411 ~ 29782570 (+) True AMCG00021782
AMCG00021784 mRNA downstream 517189 29788734 ~ 29804747 (+) True AMCG00021784
AMCG00021785 mRNA downstream 543945 29815490 ~ 29830397 (+) True AMCG00021785
TU110172 other upstream 205218 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 491824 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 3073481 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3904580 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 5092567 24174509 ~ 24177990 (+) True AMCG00021656
TU110265 other downstream 107030 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 107030 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 995857 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1117292 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 5655008 34926553 ~ 35041288 (+) False AMCG00021881

Expression Profile