RNA id: AMCG00021776


Basic Information

Item Value
RNA id AMCG00021776
length 702
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00021776
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29318323 ~ 29321631 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCATCGGCGAGAGGGCGTGGGTCTCCTGTCTCCCATCGAGGAGGGCAGCGCCGACGTGAGCCGGGACAGCGGCAATGTGTCTCAGAGCCACAGCAGCGCCTCGGTGCTGAGCGACTGCCTGAGCAGCGGCACGGTGTCGCAGAGCCCCAGCTTCAGCGCGGCTGCGGTGCGGGACGCAAGCGAGGAAGACGCGCTGCTGCTGACGCACACCGCGCACAGCTACTCCTCCTACCTGCGGGCCGACGCGGGAGAGCAGGCTCAGAGTTTGGAAAAGAGTTTGGAGGAGATGCTCACCAGAGTGGATGAGTTTGTTGGAATGCTTGACatgATCCGGAGTGACACTTCCCAGGTCGTAAATGAGAATCTACCTCAGATCCATAGGAAGTCGGAAGAAATGAGAGACATCTACAGAAAAATTGATAAGCTGGAAGCCTTTGTTAAGATGGTCGGCCTCAATGTGAATGTGTTGGAGGAGCAGGTCACCCAAGCGGAGGGTGATGTTGGAACTCTCCCCGGGGCCTTCAAAAAGATCTTCCGCACAATAAACGTCCCGTCCTTCCTCAATCTAGCCCCCGGAGAGCACCGCATCACCAAGAGCCTCCCTCTGTGTTCCGGACGGAGGAATATTTCCCTGCGCGCTCTGGACGCTGACAACACCAGCAAGGGATCAGGAGCAAGCCGCTGCATCAAGGCTTGA

Function

GO: NA

KEGG:

id description
K08366 BLOC1S4, CNO; biogenesis of lysosome-related organelles complex 1 subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110254 lncRNA downstream 37450 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 487099 28830158 ~ 28831224 (-) True G88245
TU110134 lncRNA downstream 506358 28811763 ~ 28811965 (-) True G88244
TU110133 lncRNA downstream 532662 28785166 ~ 28785661 (-) True G88243
TU110131 lncRNA downstream 538613 28779343 ~ 28779710 (-) True G88241
TU110362 lncRNA upstream 516887 29838518 ~ 29841539 (-) True G88434
TU110368 lncRNA upstream 566814 29888445 ~ 29947540 (-) True G88435
TU110503 lncRNA upstream 1103673 30425304 ~ 30425552 (-) True G88545
TU110527 lncRNA upstream 1204115 30525746 ~ 30562800 (-) True G88562
TU110628 lncRNA upstream 1640072 30961703 ~ 30962096 (-) True G88643
AMCG00021775 mRNA downstream 2882 29307887 ~ 29315441 (-) True AMCG00021775
AMCG00021773 mRNA downstream 32360 29281556 ~ 29285963 (-) True AMCG00021773
AMCG00021774 mRNA downstream 42974 29273092 ~ 29275349 (-) True AMCG00021774
AMCG00021770 mRNA downstream 46734 29268414 ~ 29271589 (-) True AMCG00021770
AMCG00021771 mRNA downstream 53890 29262452 ~ 29264433 (-) True AMCG00021771
AMCG00021777 mRNA upstream 6367 29327998 ~ 29332145 (-) True AMCG00021777
AMCG00021778 mRNA upstream 44265 29365896 ~ 29374669 (-) True AMCG00021778
AMCG00021780 mRNA upstream 65196 29386827 ~ 29402705 (-) True AMCG00021780
AMCG00021783 mRNA upstream 327144 29648775 ~ 29662887 (-) True AMCG00021783
AMCG00021787 mRNA upstream 520733 29842364 ~ 29846378 (-) True AMCG00021787
TU110186 other downstream 246563 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 535042 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 2398479 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 3163948 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 3221539 26091254 ~ 26096784 (-) True AMCG00021700
TU110330 other upstream 408446 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 1015952 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 1556217 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 1807952 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 2741754 32063385 ~ 32069464 (-) True AMCG00021849

Expression Profile