RNA id: AMCG00021781


Basic Information

Item Value
RNA id AMCG00021781
length 6018
RNA type mRNA
GC content 0.46
exon number 15
gene id AMCG00021781
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29606140 ~ 29648683 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGAGACTGCAAGCACAAAGGAAATTTGCTCAGTCGCAGCCCAACTCCCCCAGCACAACCCCTGTCAAGGTGGTGGAGCCAGCGTTACCCACTCCTGCATCTCAGATCACTGACCTCTCCAAACGCAAGCCCAAGACGGAGGACTTCCTGACGTTCCTCTGCCTTCGAGGCACCCCTGCTTTGCCTAGTAATATGGCATACTTCGGAAGCTCTCAGGATGAAGAGGATCTggatgaggaagaggagtatgaggATGTGAAAGCAGCTGCCAGCATAGCGTCTAcgtcctgctcttccactcCTAGGAAGGGGAAACTGCAGGGCAAGCACACGCTGAATGGACATGTGTTCAATGGACAAAGCAAATCGTCACGGGAGAAGGATTCCACTCAGAAACACAAAGGCAAGGAGGCCACGCCGGGGAAAGAGCGAGGGGAAAAGGCGGAGGGGCGCAGAGACCAGGCCGTGTCCACTGCAGCTGCTAACCACACAGGACCCTCAGCCAGGGGCCCTACAGCCAATGGCCTGTCTCACAGCAAAACAGCTCAGGAGCTCCGCAAGCAGATTTCAAAAGTGAACGGATTCACCCGGGCGTCCTCCCTGGGTGCACACACACCCAGTGCCAAAAAGACTAAAGACTTCCGACCATTGCCGTCCAAAACTGTAAAGTACACAGCCACTGTGACCAAGGGGCACGTCACCTACACCAAAGCAAAGCGAGAACTGGTCAAGGAAACCAAACTCAACCACAGCAAACACACCCCCTCTCACCCGCCCCACCACAACAgcaaccaccaccacaacaaccaccaccaccacctccacaACAGCAACCATAACACCACCCACCCTCGCCTCCAGCACTCCAACTCAGGAAAAGCCGAAAGTAGCAATGCAAAAACTCGCAAACAGGTGCTATTATCCAATGGGGTTCACAAGCCAGCCAATGGGGGATGCGTGCGACTCAACGGGAGGCTGAACGGTCGGCTTTGTGCCAAGGAGGAGGGGCGGCAGGTGCGTGAGGGCCTGCGCAACTCGAAGAGGCGTTTGGAGGTGGTGACGGGCGGCCTCGCAGGGAAACGGGTGCCAGCAGACCCCAAGAAAGCCAAGCTGCACGTGCGCTCACCGGAGACGCGCAGCAAGACCGCTCACCTGGACAAGGCCCTGGCCAATGGGCACATTAAAGAGACCGAGCAGCCCACTACGGAGAGCCAGCGGCCCAGAAGGGCTTCGGCTGGCAGGTTGATGTTTAGCAAACAAGCACACAACAACAAGGCCCAGGGCACCCTGGCCGAGAACCGTTCTACTACCTCAGCATCCGAGCCCTCCCCCACCCCGCAGAAACCAGCAGAGCCTAAAGTGGAGAAGGAGAAAACCAAGATGGGCTGGGCCGCCATGACCGAGGTGCCCATCTTCAGGCCCAGCCACAAGGAGTTCCAGGACCCTCTGGTGTACATGGAGTCCATCCGGGATCAGGTGGAGCCCTACGGCCTGTGCAGGGTCATCCCCCCACCCGACTGGCGGCCCGAGTGCAAGCTGAACGACGAGATGCGCTTTGTCACACAGGTGCAGCACATCCACAAGCTGGGCAGGCGCTGGGGCCCCAACGTCCAACGGCTAGCCTGCATCAAGAAGCACCTCAAATCTCAGGGCATTACCATGGAGGATCCCCCACTTATCGGAGGCTGTGAGCTGGACCTGGCCCGCTTTTTCCACCTCATCAATGACATGGGTGGCATGCAGCAGGTGACGGACCTCAAGAAGTGGAGCAAGCTGGCGGACATGCTGCGCATCCCCAAGTCGGCACAGGATCGTCTCGCCAAGCTGCAAGAGGCCTACTGCCAGTACCTGCTGTCTTATGACACTTTGTCACCCGAGGAACGCCGGatgctggaggaggaggtgcTGGCGGAGAAGGAGAACTTGGAGAAGAGGAAGGGCCCTCTGGAGGGCCATTCAGAGAACACCCACAAGTCTCTACTGCTGCCCCGGTACGAACCCAAGAACGGGCTCATCAACGGCGTGGTGCACAAGAACGGCTTCCGCAATAAGCTGAAGGAGCTGGAAACTCACTTAAAATGCGGCCGGCGACGACTATTTGCTCAGGAAAAGAAGGAGAACGAGGAGGAGAACGGTGTTCTCAGTGACCAGCACAAGTGTACATACAAGGGGAGATCGGTATCCTTAACCACATTCTACAGGACAGCCAGGAACACCACAAATATGTGCTTTAACAAAGAACCTGTGGCAGCTGAAGTTGAGCAAGAATACTGGAGGATAGTGGAGCAGAAGGACTGCCATGTGGCAGTGCACTATGGGAAAGtggatacaaacacacatggaaGCGGCTTCCCCGTGGGAAAGTCAGAGCCATTTTCAAAGCATGGATGGAACCTCACAGTCCTTCCCAATAATTCAGGATCCATCCTGCGCCACCTTGGTGCTGTGCCTGGAGTGACCATTCCCTGGCTAAACATTGGCATGGTCTTTTCTACCTCATGCTGGTCCCGAGACCAAAATCGCCTTCCATACATTGATTACTTACACACTGGTGCTGATTGCATTTGGTATTGCATTCCTGCTGAGGAGAAGACTAAACTTGACAAAGTGGTGCACACGCTGCTTCAGGCCAATGGGACTCCAGGGCTAGAGATGCTTGAAAAGAACATCATGATCTCTCCGGAGGCGCTGGTTCGTGAGGGGATAAAGGTCCATCGCACCGTCCAGCAGAGCGGCCAGTTCATCGTCTGCTTCCCGGGGACCTTCGTGTCAAAAATATGCTGTGGCTACAGTGTTTCCGAAACCGTGCACTTTGCTACCACCCAGTGGATGAACCTAGGATACGAGGCTGCTAAGGATCTGAAATGCAGGCGTATAGCTAAACCCTTTTCCATGGAGAAGTTGTTATACCAGATTGCAACAGTGGAGTCCAAACGGGAGAATGGTCACAGTTTGAGTGCAGTCTCTTCACTTCTCAAAGATCTCAGGGATATGGAGTTGAGACAACGGCAGGAACTGTATGAGGCCGGGCTGCTGTCCTCGGCTCGCTACGGCACACACGACAACAACCAGACACCAGTCGAGGGCAAGAAGAAACATCGGAAGTGGCTGGCGCTGGAGACGTCGGAGAGAAGATGCCAGATATGCCAACACCTCTGTTACCTGTCCATGGTGGTTCAGGAGAACGAGAACGTGGTCTTCTGTCTGGAATGCGCTCTTCGCTACGTAGAGAAACACAAGTCCTGTCGTGGCCTCAAAATGATGTATCGCTATGATGAGGAGCAGATCAACAGTTTGGTTAATCAGATCTGTGGGAAAGTGGCAGGGAAAACCGAGAACTGCAACGGCGTGAGCCTCAACAAGAGCCCGGCGAAGAGAGGGCCCAGGAAACGAGCCACGGTGGACGTCCCGCTGTCCCGTCTGTCCTCATCACACATGTCCAAAAGTGCTTCTAGTTCCTCATGAAGAtgccaatatatttttttttttttttcccacgttttgtcattttgttttcccaacCATAGTATGGAGAACTTGCTGTAGAACGCAAGCTGTCTTTGCACTAGCTCTAAAGAggatttaattctgtttttagagaagtatatttgttttagcattaaatataaaacctaCTGCGGttcacctttttcttttttttttcccctttgaatCGTAGTATCTCCACTGTTTCAAATGCATGTCAAAAAAGGGctgacctgtttttttttttattttctttattaagatttttttaaatatactctTTCTTCCCAATCAGCCCCTTCGACTGCATAAAGATTTAGTTTGGATTTTTTGTAACTGTGAAAAAAAAGGTCGgctattttaaagcaaaaacgAAAGGGCATAAAAAAAGTTTCATTAGTTTAAATTAAGGTCAGcgctgtgtttttattctttcagtCATGCAAGCAGCTTTTTTGGTAGAGATCGTTGGAAGTAAAACTTGAAAGAAACTGCTTTGCTTGactgagttttattttgttttaatcattttttgttttgtttttcccccctgaGGGACTGGGAGGACGGCATCAGGGGAAAAGGCATAATTCCATGgcagctccaaaatgtttttttgttttgttttgtttgttcgttcAGGAAACAAGTGGCAGACAGATTATGAGGATCAGAGCATTATCGATTTAACATCACTATGCATCTGTGTAAAGAGAAATAAGACATAAGAAAGCTGCCTTCTTCAGGAGCCGTTACATGTGAAAACCGTGCCTGATTTTAGTAGGAAATACACGCAATTGTTTtggtgctgtttattttttattttttatttttaagtgctcAATTTTGGCATTTACAACAGAACAAGAGGCTTCAATGCTTTTTGATTCTCGATGTGCAATCGTATTAACATTCCATTCTCCTATTCGTTttgtttcatctgtattaaactcagcattaattattattgttgttattattattattattatttcttatgttttgatttacattttggtCTGATGTGACTTCACAAGTAGAGCCACTAGTAAAggttgtaaaatgtgaaaatgaaaaatccaGTTTTCCTCtcacttttctttgttttcacttttcagatgtattacaaaaaaattaaagaaaaaaaagagaaccgaaaaaaaaaccacacgaaagaaaaaaaaaatacaaaaaaaaaaaattgtacataCGCCTGtaaatttctttaaatacttgAGCCTTTTTCGGGGGAGGGGAGGGTTGGGGTTGGGGAGGAAAAGCAGATGAAGAAAAGCcttatatttcagtttcttcATCGGTTTGAGTTTGATGCTTACAGGGTTTCTCTtgtaacatttataaataagtgCTGCTTACATCACTGAATAAATATGGAGTAGCTGTCGCcccttagttttgttttttagctttACTTTTTTAAGAAAAGGGAAAGATGTTCACAAAAtggtttttacattttcattactgaAAATTCAACAATGTAGTAGCTACTCATGTTGCACTGAGCTTGTCAGTGAGGACTGTCAAGAAATCCTATAATCCAGTTGTTGGTTGTCGTCCTTTACAGAAGACTGAACTGTTTTAGgagtatttaatgaaaacaagtcgagtgttttcaaaatgtggtTGTCAAGTTTTTATGGccttacaatgtattttatgattttttttttctttttctacagtGAAACTATTGCTTACAGtctgacatttaatttattagcGCTGCTCTTCAGCCTTTCCTTCCATGCGGAAAGATTCATGTTGGTTATTGCcagttttttacttttcaagTTTGTACTTTTAAGGTTTAATAAAAACTTATGGACAATTCACTGTCAATTCTTTACAAACCATGTTTCTAtcttgctttgtgtgtgtgtgtgtgagtgaagaACATTTCTCTTCTCGATTAATAAGGCAGAGCTCATTATTTTTGCTGCCGGTCTGGTTTACAGTGTCATCCAGTGGAGGTAATAAATACTGCATTCTCTACCGCAAGACTTTTGTGTTGAGTGTATGAACTGGAAGTTTGAATCTTTCCTTTAATACTGGTTGCTGCTTCTTTTAAATCTCTCTGCAATATATTAGCACCAGTcattttctagttttttttctctaaacttGAATTCTTATAACCTTGCCAGAACTATCACATCatatacagatacatatttTGCCAAAATGACTgtcctttttaaatgtctttagaTGAAAATTGAGAAACAACTAACCACTAATAGTCCGCCCCTGCTGTGAAACATGAGTATAGTACTTGTGTGCTGATTAGGAACACATTGGCTTCGGACATCAAGTTCTAAACTTTCCCTCTTTAACTTTTACATGGCTACctgcatttctgtatttgtttgtgatcTGTGTGCCATTAAGTTAAATGAGCTCACATGATATTCCTCAAATAATACCCATAGGGAATCCTGGGTGCAGGATCATTTGATATAGCAATCTTAAATGTATGTCATATATAAGTAGTattcactttacattttg

Function

GO:

id name namespace
GO:0031061 negative regulation of histone methylation biological_process
GO:0048863 stem cell differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0051574 positive regulation of histone H3-K9 methylation biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0003682 chromatin binding molecular_function
GO:0032452 histone demethylase activity molecular_function

KEGG:

id description
K11478 JARID2, JMJ; protein Jumonji

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110262 lncRNA upstream 217539 29376521 ~ 29388601 (+) True G88352
TU110269 lncRNA upstream 220815 29383870 ~ 29385325 (+) False AMCG00021779
TU110266 lncRNA upstream 223867 29378575 ~ 29382273 (+) True AMCG00021779
TU110209 lncRNA upstream 290581 29307879 ~ 29315559 (+) True G88308
TU110207 lncRNA upstream 308060 29297837 ~ 29298080 (+) True G88307
TU110328 lncRNA downstream 76476 29725159 ~ 29725962 (+) True G88403
TU110374 lncRNA downstream 326358 29975041 ~ 29978559 (+) True G88440
TU110389 lncRNA downstream 398445 30047128 ~ 30048888 (+) True G88450
TU110396 lncRNA downstream 488855 30137538 ~ 30139284 (+) True G88454
TU110394 lncRNA downstream 493512 30142195 ~ 30219496 (+) True G88452
AMCG00021779 mRNA upstream 220817 29382085 ~ 29385323 (+) False AMCG00021779
AMCG00021772 mRNA upstream 330793 29266438 ~ 29275347 (+) False AMCG00021772
AMCG00021769 mRNA upstream 382828 29210277 ~ 29223312 (+) True AMCG00021769
AMCG00021768 mRNA upstream 510879 29076101 ~ 29095261 (+) True AMCG00021768
AMCG00021766 mRNA upstream 564199 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021782 mRNA downstream 104728 29753411 ~ 29782570 (+) True AMCG00021782
AMCG00021784 mRNA downstream 140051 29788734 ~ 29804747 (+) True AMCG00021784
AMCG00021785 mRNA downstream 166807 29815490 ~ 29830397 (+) True AMCG00021785
AMCG00021790 mRNA downstream 428689 30077372 ~ 30091490 (+) True AMCG00021790
AMCG00021792 mRNA downstream 445186 30093869 ~ 30103130 (+) True AMCG00021792
TU110265 other upstream 223867 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 223867 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 540801 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 827407 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 3409064 26152068 ~ 26197076 (+) False AMCG00021703
TU110433 other downstream 618719 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 740154 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 5277870 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 5389156 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 5562450 35211133 ~ 35263537 (+) True G89142

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028072 True 3915 mRNA 0.52 17 NC_007130.7 26072624 ~ 26156531 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_10518872_10568706.mRNA True 3852 mRNA 0.55 17 CI01000054 10518872 ~ 10568706 (-)