RNA id: AMCG00021783


Basic Information

Item Value
RNA id AMCG00021783
length 1542
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00021783
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29648775 ~ 29662887 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGGCCATTCTCTCATGATAGCGGACCTGGATTCAGAGCATGCCCAGAAGGTGTTAGACATGGAGCATGCTCAGCAGATGAAGCTGAAGGAGCGGCAGAAATTCTTCGAAGAGGCCTTTCAGCAAGACATGGAGCAGTATTTATCCACTGGCTACCTACAGATTGCAGAGAGGAGAGAGCCAATAGGGAGCATGTCGTCGATGGAGGTGAATGTCGATATGCTGGAGCAGATGGACTTAATGGATATGTCTGACCAAGAGGCTCTGGACGTCTTCTTAAACTCAGGGGGAGAAGATAACAGCGTGGCTTCACCGATGCTGGGGCCAGAGATGGATTCGTATCCCACTGAGATCACACTGCAGGTTCCCAGCCAGGCGGAGCTGCGACACAAGCTCTCCTCACTCTCATCCACCTGCACGGACTCGGCCAGCCAGGAGGGGAGCGACTCACCCATCGTGCAGTCGGACGAGGAGGAGGTGCAGGCTGACACCACGCTGGCCGTGCTGCAGGACCACCAGCTCCTCAAAGAGAACTCTGATGACAGCGATTCGCAGGCCGCGTAGACGCTCTTTCTCACAGACGACAacgaaaagaacaaaaataaacaaaacccaacCTTGACTTCTATTAAGGTGTATTGAAATGTGCTTGGAGTGAAAAGAACTCCAtcaaatcgttttttttttttttaattattatttttttaaactcccATGTCCTGTATCTAACTCTTCAGTGCTGTGCTGAAACaccccaaaacaaaatctaaaacaataaaaaaaaactattttttttttttcaaattgttctTTTATGTATACCGAACCACTCACTTGTATCCAGGCTGTCTTCTATCGGAAAGCAACTCCAGTCAAACTGATTTTAGGGCCAGTACTACACTTGGGAGATGGGAGCAACCATCTACATCAAACTTtcaaaataacaggaaatggaGGCTTAATCACTTTGACTTTgtgtaattaactttttaatgtaCTTACTTAAAAAACTCCTGTTATCCAATGTGCTCTGATCTTAACCTTTAAAACACTATACCATGCAAATGGGCAACAAAGTACAAATGCAAACCATGTGTTAGCCATGTGTGTCGATATCCCCGTTCAGCCACTCACATCAGCACGCATCTCACGCTTGACACTTCTGAGTGGCCATGAATGGACCGGTTGTCGATTCGGAAACCTGCCGGTGCCAAGTATGGTCATCGGACATGAATACTCTGTAGGTCACATGTCCGTTtccaatgtaaacaaatcagccGTGATGATTTATCAGTAGgaaaattgtttaatatttaatggaaaatacTGGGCAGTATATCCAGTATTTAAGGTAAATTATCACCTGCCACATCAGGCATTAAATCGAGCAAAGGCGGCTGCTTGAACTTGCCATCTGTGTCAGGCGGTCCCTTATGTCGAACCATGGTAAATACAGTGCCTATAAGAAGTATTCACTTTACATGTTGTAGTTACATCGTGaaattgttgcatttaaatcatttttccctttgatttaaA

Function

GO:

id name namespace
GO:0048490 anterograde synaptic vesicle transport biological_process
GO:0031175 neuron projection development biological_process
GO:0008089 anterograde axonal transport biological_process
GO:0005768 endosome cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component

KEGG:

id description
K20189 DTNBP1, BLOC1S8; dysbindin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110254 lncRNA downstream 367902 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 817551 28830158 ~ 28831224 (-) True G88245
TU110134 lncRNA downstream 836810 28811763 ~ 28811965 (-) True G88244
TU110133 lncRNA downstream 863114 28785166 ~ 28785661 (-) True G88243
TU110131 lncRNA downstream 869065 28779343 ~ 28779710 (-) True G88241
TU110362 lncRNA upstream 175631 29838518 ~ 29841539 (-) True G88434
TU110368 lncRNA upstream 225558 29888445 ~ 29947540 (-) True G88435
TU110503 lncRNA upstream 762417 30425304 ~ 30425552 (-) True G88545
TU110527 lncRNA upstream 862859 30525746 ~ 30562800 (-) True G88562
TU110628 lncRNA upstream 1298816 30961703 ~ 30962096 (-) True G88643
AMCG00021780 mRNA downstream 246070 29386827 ~ 29402705 (-) True AMCG00021780
AMCG00021778 mRNA downstream 274106 29365896 ~ 29374669 (-) True AMCG00021778
AMCG00021777 mRNA downstream 316630 29327998 ~ 29332145 (-) True AMCG00021777
AMCG00021776 mRNA downstream 327144 29318323 ~ 29321631 (-) True AMCG00021776
AMCG00021775 mRNA downstream 333334 29307887 ~ 29315441 (-) True AMCG00021775
AMCG00021787 mRNA upstream 179477 29842364 ~ 29846378 (-) True AMCG00021787
AMCG00021786 mRNA upstream 312099 29974986 ~ 29986193 (-) True AMCG00021786
AMCG00021789 mRNA upstream 379992 30042879 ~ 30045102 (-) True AMCG00021789
AMCG00021788 mRNA upstream 384443 30047330 ~ 30048871 (-) True AMCG00021788
AMCG00021793 mRNA upstream 479335 30142222 ~ 30158707 (-) True AMCG00021793
TU110186 other downstream 577015 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 865494 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 2728931 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 3494400 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 3551991 26091254 ~ 26096784 (-) True AMCG00021700
TU110330 other upstream 67190 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 674696 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 1214961 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 1466696 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 2400498 32063385 ~ 32069464 (-) True AMCG00021849

Expression Profile