RNA id: AMCG00021787



Basic Information


Item Value
RNA id AMCG00021787
length 2949
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00021787
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29842364 ~ 29846378 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GATTCCTGGAGCAGTTGTGGAGTCTTTGGGGCAGTGGGAAATGATTCCTCATGAAGTCCATGGATCACTTTCTGAGAGCAGGCGTGACTTTCCAAGCCTTAGACTGAGATCCATGCTGGTCAGACACTGAAGAAAGCCCTCCAGCACAGATAACCAGCGGGTGGGAGGAACCCCgtacagagagcgagagagagagaagaaacagaaagaaacagagagaaagagggagagaaaacagagaaagagaacaaTAGAGCCAACTGCAGAACCATGAAGTCCAACCAGGAACGTAGCAATGAATGCCTTCCGCCTAAAAAGCGAGAAATCCCGGCAAGTAACCTGCCCTCCGATGAGAAGCCTGTAGTTGTGGCCCCTGCTAGTGAGAGCCAGCGAGGAGAGAACCTAACTTGGCTTGCTAACGTGGCCAGCAGACAAAACAGCACTGGGCGGCACAGCAGCATGCCATCTGAAGTAGGTTTGACGCAGGAAAGCTCTGTATACAAGCAGCTCCCGACCACGGTGGAGTATTTGTCCTCATCCAGAGTCTCAAAGCCGGGGGCCACTGTCACGACTCTTCCTGCAGCAGTCTACCCACCCCTCTCACAGCCAGGCGGGACCATCCAGTACACCCAGTTACCGCCAAATCTCCAGTTCACCTACACAGGGCCGTACACTGGCTACATCCCCTCACAGCTCATCTCCCCTACTGCCACTACAGCACCCACACCATCTTCCCAGCGCACCCATTTGGAGGCCTACACAGCCGCTGTGATCTCTCAGGCCTCCAAAGTCGACCAGCACCACCAGTTAGGCCGGTCACCTGGACTGGTAGCTGCCGGGGGTACCCCTCCACCGCCCCCTTCTGTCCAGCCGACCAATCAGTACGTCCAGATTGCCAGCTCCCCTTTGAGCGTCTCCTCTCCTCCTACCCACCTCCCACTGCACCTCCACTCCCATCAGGCTGTCATCCCTCATGCCTTGACCCTCGGCGGCCCCCCACAGGTGGTGGTCCAATATGCAGACGGGCCTTCGGCGAAGAAAGAGGACGGCCGGACGAGAGAGATGCTGAATGGTGAGCTGGAGAAGGGACGGCGCTATGGCCTGTCCCCTGAGATGGCCAAGGCCAGCAGTGGTGCTAAAGGAGCCTCCAGCCAGCagcaccatcaccaccaccaccagcagcaACAGCACCACTATGAGGCCCGGCACGTCATGCTCCCTCCCGACTACAGCACACATGAAACCTCAGGGCTACGGACCTCACTGATGCTGGTGCCCAACAGCCACGCGACCAGCAGTGCCGACTTAGAGATGACCAGGGAGAAATCACCATCCTCCGGCAGCCACAACGAGAAGGCAGGAGGCCTCTGCATGGGGAAGCCTGTGTCCAGGGCTTCCTCGTTCACCTTCTCTTCCTCGCAGCTTGGTGCGGACAGTTTGAAAGCGGCAGTCaccactctctctcctcacacCGTTATCCACACCACTCACAATGCCACCGAGCAGCTCTCCCTGGGCCTCCCTGCTACCAATTTCTACCCCACCACCGCCCAGCCGCCCATCATCGGCTACATCACAGGAAGTGGGCAGCAGCAGACCTCCGTCGGGTACCATACTAACCTGCCCCAGCACTTGGTCATTCCCGGGAACCAGCCCTTGCTCATCCCTGTGAGCAGCAGCGGTGGGGAGCTGGAATCCGGCCATTCAATCGTCACGTCGTCCCAGCAGTTCGCAGCAGTGCCTCACACCTTTGTTGCCACGACAGTCCCTAAGTGTGAGCCTTTCGTGTCTAGCGAGCCACAGTCCCCATCCACTTACCACACTGCTGCTGTGGTGCAGGCCCAGCTCCACTTACCCATAGTCCCTGCTAGTGCCCCTGCTAACGTACTGCCTCCTCCCCCagcctcctcctctccttcactgcccCCCTACTTCATGAAGGGCTCTATTATCCAACTGGCAGACGGTGAGCTCAAAAGAGTGGAGGACCTTAAGACCGAGGACTTCATCCAGAGTGCGGAGATCAGCAACGACCTGAAGATCGACTCCAGCACAGTAGAGCGGATCGAGGGCAGCCAGACACCCAACTTTGCCATCATCCAGTTTGCGGTTGGAGAGCATCGAGCTCAGGTAAGCGTGGAGGTTTTAGTGGAGTACCCCTTCTTCGTTTTCGGCCAGGGCTGGTCCTCCTGCTGCCCAGAGAGGACCACCCAACTGTTTGAGCTGGCCTGCGCGAAGCTGTCCGTGGGCGATGTGTGCATCTCGCTCACCCTGAAGAACCTGAGGAACGGCTCCCTGAAGAAGAGCCAGGGCCCGGACGGCAGCAGCGGGCTCCTGCTGAAATCCCCCAAAGGAGAGGGGCTGTACAGTGGGCGGGGCCGCTACATTGAGCAGGAGAATGGACTGGGGCAGCGGGCCGGCGGGGCGGGCACCATCGGTCCGCAGGCCGTCTCTGAGAATGGGGAACTGAAGTTTCTGGACAAGACCCTTCCTGACACCTGCAGGCCCCTGCCCCCTAAAACAGAAGCCGGCAGCAAGCCAACGACAAGGAAGAGAAGGTGGTCAGCCCCAGAGGGACGCAAAGTGGAGAAAACGGAAGAGGAGCCTCCATTGACTCTGCCCAAGCCCTCTTTTATCCCTCAGGAGGTTAAAATCTGCATCGAAGGCAGGTCGAATATAGGCAAGTGAAGGCTAATGGGGGACTTTTTATAATGTGGAAGAAAATAACTTCCCTtcataacgtttttttttttagtttttcctttgttATCTATCCAGATTACTGTACTGTAGGCTAAATAACCCAGTATTTACATTTATCATCCTACTTTAGGTTCATGTTATAACCTTGTAATAGTTGCATTTGGTATTACACAGGCAATTGGCGCAGTTGTTTGTTCCACATTCTTGGGAAGTTATGAGAgggaatatatatgtgtgtctgtatgt

Function


GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K23616 ATXN1_1L; ataxin 1/1L

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110362 lncRNA downstream 825 29838518 ~ 29841539 (-) True G88434
TU110254 lncRNA downstream 561491 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 1011140 28830158 ~ 28831224 (-) True G88245
TU110134 lncRNA downstream 1030399 28811763 ~ 28811965 (-) True G88244
TU110133 lncRNA downstream 1056703 28785166 ~ 28785661 (-) True G88243
TU110368 lncRNA upstream 42067 29888445 ~ 29947540 (-) True G88435
TU110503 lncRNA upstream 578926 30425304 ~ 30425552 (-) True G88545
TU110527 lncRNA upstream 679368 30525746 ~ 30562800 (-) True G88562
TU110628 lncRNA upstream 1115325 30961703 ~ 30962096 (-) True G88643
TU110741 lncRNA upstream 1952374 31798752 ~ 31836239 (-) True G88736
AMCG00021783 mRNA downstream 179477 29648775 ~ 29662887 (-) True AMCG00021783
AMCG00021780 mRNA downstream 439659 29386827 ~ 29402705 (-) True AMCG00021780
AMCG00021778 mRNA downstream 467695 29365896 ~ 29374669 (-) True AMCG00021778
AMCG00021777 mRNA downstream 510219 29327998 ~ 29332145 (-) True AMCG00021777
AMCG00021776 mRNA downstream 520733 29318323 ~ 29321631 (-) True AMCG00021776
AMCG00021786 mRNA upstream 128608 29974986 ~ 29986193 (-) True AMCG00021786
AMCG00021789 mRNA upstream 196501 30042879 ~ 30045102 (-) True AMCG00021789
AMCG00021788 mRNA upstream 200952 30047330 ~ 30048871 (-) True AMCG00021788
AMCG00021793 mRNA upstream 295844 30142222 ~ 30158707 (-) True AMCG00021793
AMCG00021796 mRNA upstream 409653 30256031 ~ 30265454 (-) True AMCG00021796
TU110330 other downstream 99556 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 770604 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 1059083 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 2922520 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 3687989 26152105 ~ 26154375 (-) True G87871
TU110482 other upstream 491205 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 1031470 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 1283205 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 2217007 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 4500610 34346988 ~ 34380295 (-) False G89004

Expression Profile