RNA id: AMCG00021792


Basic Information

Item Value
RNA id AMCG00021792
length 2346
RNA type mRNA
GC content 0.38
exon number 3
gene id AMCG00021792
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30093869 ~ 30103130 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATTCGCGGCGGCTGGTCAAGCGCTCTATCCTCGGGAGCCGCGTCTGTGCGCCGAGCCCGGCGGGGGACGGGGCGCTGCTGCCCGGGGTGGTCCAAGCTGTCAAACAGGAGAGCCGGGATGCCGCGACCGGAGCCCGCCGGAGTGTGTACACGGTGCTGATGCAAGACGGGAGCTTGCGAGAATACCCCGAGGATGACATTATCAATGCCTGCAATGGCCGGGATCTCGCCACTGTGGGCCAGCAGGAGCAGAAGGGCGATGGGCCAGAGCAGCAGGAGGAACTCCGCACACAGGACGCCAAAAAGAGCAGCCGGGCCCCGGAGACTGACAAGGAGCCTCCTCGTTCGGTGTCCCTACTGGAGCAGAAGCGCAAAGTGGTTTCATCCAGCATCGACGTCCCCCATGCCAGtttTTGGGATCTTGGAATTTTATCCAACCATTTCATTAAGGAAGCAGAGAGTCAACCTTAACGACATGGATGGATTATTTGTTCCTGACTCTTGACTCTTGATGTTTAAATCACTGTCTCTTCttaataaaaaattaacaacaacatcTGGAAAATTggatatgtaaaatgttttaggaATTTGGAGCCACATAGTAAGCTAAGtctatttagatttttctctaCTTGGGCTTCAGCTGTATCCGTTTTAATGAGGACACTGAAAATGATAAAGAAATGCTAAATATTGCAAAGATATGAAACTGTAGATAACTGGCCAAGAAATGCCCCAGACATGTATTCTATACATTCAATAATGGGATAAAGAACCTCAAATTATCTAGTGAAACCAACATAAATTAGAAGTCATGAGAAAGATCTGCTATAAAGGTAAAGccactgacactctgacactATACTACCttataaattgatattttacagaagcttaatattgatatatttaagcTTCCATGCTTTCTAATGTGGCTCATTAAAACCATGACCagcttcagaaatgtattgtgtGATTATGAGATGATTATCCCAGGATCTTGTTTTTGCTAGTTATCTTATGATCACAGGTATTATTAATCTCGATCTCGATTATTATCATTCCATTATTGCTTGATCACAATATAAATTCTCTCAATCTTGAGATAACGAagccctttttttattttgtcatggcCTCAATGAGGCACCGTAGTTATCAAAAAGGAAGCACATTTTGAAAGAATGGAATTGTATCATGTCTACAGATAGAAAATACTAGCCTTATTGAGATGGGtatgtgaaatatgtattttgaaacacaCATCGCAAACATTAGGCCTTGttgttaaattaaacttaaGCGGTTTAACATAAAGCCTCTTTAttgagaaaacaaactgaaataccaaaattgatttattttatgtctgtCTTTTGGGCATTTATTGAAAATCCATTAGGtaaatgcagatgttttttcAGCCATGTGAggaaagaatatattttttgagtTAACTGCAGGATCTTTGTATATGACTATTGACATTATATTTTAGataacttctctctcttcacagaCTTTCTGTTTGAGGAGGTTTTTTGATTTGATCATGCAATTTTATTGAGTTCATGTTTGAGGGTTTGCAATCATTGCAGTTGAATTCAAGTGAACAGGCTTCTGAagtaaaacagaataaaaatgctttatagTAACAGATTGATACATTCACAACATAGTTGGTATAAAATGATCATTGTAGTCTATTCTTTAATCTTtctctttttgctttttttgtttttgttgctctGTTTGTCATTGAACTGTGATGTCGAATTGTCTTGGTCTTTGGTCACTTTATAGTTTATggaaagtgggggaaaaaaaagaatgtatgCAATGACTAATGATAATGCAATTATATGATCTGTAGTGCAAATGGGGATTTTGATTGGATAATCACTTTCACTTCATGAATATTCAATTATCATGTTAATGTTCATAATGGGttatataataatgatgaatgATGTAATCATGTTTACGGCTATGCTGACACTCTTGAGGATACCTTAATTAtgtatacaatttatttgaaagcaaattgtttgttattgtgtttggAAAATGCAACAGTGATAATGCCTCTGAGCCAGTTACTTATGTTAATGTGTAacataaaaaccaaaaaaatctaTAACCTTGTCAGAAATAAACGTGTTTCTCAGTACTGAGTCGTCAACAACAGCTCCCATCTCCATTGTAAATCAACTAAAGACTTATTGggaaagtgtttatttaaattagggAAAGATAAAACTGCACCATCATCAGGGTTCCAAAATACAGAAGACTCGCATAATGGCATAAACTTGTGAACAGCTGCCAGTGAGAATCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110389 lncRNA upstream 44981 30047128 ~ 30048888 (+) True G88450
TU110374 lncRNA upstream 115310 29975041 ~ 29978559 (+) True G88440
TU110328 lncRNA upstream 367907 29725159 ~ 29725962 (+) True G88403
TU110269 lncRNA upstream 708544 29383870 ~ 29385325 (+) False AMCG00021779
TU110266 lncRNA upstream 711596 29378575 ~ 29382273 (+) True AMCG00021779
TU110396 lncRNA downstream 34408 30137538 ~ 30139284 (+) True G88454
TU110394 lncRNA downstream 39065 30142195 ~ 30219496 (+) True G88452
TU110430 lncRNA downstream 152894 30256024 ~ 30258197 (+) True G88485
TU110466 lncRNA downstream 363773 30466903 ~ 30468920 (+) False AMCG00021802
TU110586 lncRNA downstream 624154 30727284 ~ 30730868 (+) True G88609
AMCG00021790 mRNA upstream 2379 30077372 ~ 30091490 (+) True AMCG00021790
AMCG00021785 mRNA upstream 263472 29815490 ~ 29830397 (+) True AMCG00021785
AMCG00021784 mRNA upstream 289122 29788734 ~ 29804747 (+) True AMCG00021784
AMCG00021782 mRNA upstream 311299 29753411 ~ 29782570 (+) True AMCG00021782
AMCG00021781 mRNA upstream 445186 29606140 ~ 29648683 (+) True AMCG00021781
AMCG00021791 mRNA downstream 15890 30119020 ~ 30126407 (+) True AMCG00021791
AMCG00021794 mRNA downstream 82190 30185320 ~ 30200518 (+) True AMCG00021794
AMCG00021795 mRNA downstream 146953 30250083 ~ 30254353 (+) True AMCG00021795
AMCG00021799 mRNA downstream 188111 30291241 ~ 30299913 (+) True AMCG00021799
AMCG00021800 mRNA downstream 244694 30347824 ~ 30375199 (+) True AMCG00021800
TU110265 other upstream 711596 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 711596 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 1028530 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 1315136 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 3896793 26152068 ~ 26197076 (+) False AMCG00021703
TU110433 other downstream 164272 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 285707 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 4823423 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 4934709 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 5108003 35211133 ~ 35263537 (+) True G89142

Expression Profile