RNA id: AMCG00021796


Basic Information

Item Value
RNA id AMCG00021796
length 2632
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00021796
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30256031 ~ 30265454 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggggggggggcaatgtGCGCAGGCGCAGGCGCGCGCTCCTGCCTGTGCCGCGGCCCCGCGGAGCCTGATCTGCTGACTCAGTCCTTACTCAGTCCTTACTCAGTCCTGCTCTGCCGCCGACTGCAACTGCACTGCCGTCCCCGCTGCTCCGAGCTACTGCACCATCCACTATGGCCAAAACTGCAATGGCGTACAAAGAGAAGATGAAGGAGCTGTCCATGCTCTCCCTCATATGCTCCTGTTTTTATCCGGAGCCTCGCAAAAACCTGATCTGTGAATTTGAAGACATGGAGGTCAAACCGATTAACAAGCGAGCTTCCGGCCAGGCATTCGAAGTGATCCTGAAGCCGCCCTCTCCAGTGTCCGATGTGGCCCACTCCCTCGCAGCCACCAAGAAGAGGGATGTCTCCCTGGAGGACATCCAGAAGAAGCTGGAAGCGGCAGAGGACAGGAGAAGATCCCAGGAAGCCCAGATCCTCAAAGCTCTGGCTGAGAAGAGAGAGCATGAGCGAGATGTCCTGCTGAAAGCCATGGAGGAGAACAGCAACTTCAGCAAGATGGCTGAGGAGAAGCTGACAATGAAGATGGAGCAGATTAAGGAGAACCGTGAGGCCTACCTAGCTGCCCTGCTGGAACGCCTGCAGGAGAAGGAGAGGCACGCTGCCGTGGTGCGCAGGAACAAAGAGCTGCGGGAAGAGCTCTCGGCATGAGACAGGCACGGCGCCATTCTTCACCTCATTCCCCAGCTAGAACTGCAAAGACAACGAGCCTCCGGCGTCCAGAGGGTAAGAGACGCTGCTCCAACACTATCAGCATAATCAAAAGTGACGCACTCCTTTCAGACGAATGATTTGCTTGATGTAGAACAAAAAGTGAACATGGATCTTGTTTTGTAAATacctttttttgttatatatgtataaacaaaaaaacaaaaaaaacaaaaaaacaagagtaTCGCGATGTCCAAttgtctattttttcttttacgtacgtatgtatgtatgtatgtatgtatgtatgtaagtatgtatgcatttatttttattagtatgattttatttgaaactgACATGTACTGTAACAGGCTTTGATGTTGTGAGTTGCCAGTTTTGCTGACTTTCCGATGTCTGGTCCTCTGATTATCTCTGTATCTGTGTCGACTCAAAGAATGGTGCACAGCATGGGAGTTTATTGCCCTCCAGTCACAATAGAGAGAGGTTAATTAGCTGACTTACTCTTAAAACCTGACCCCACCCCACCCTTCTCCAGCTGACACTATCAGCAACCCCCCACCCTCTATATTGACTTCTTGTGTGAGCTAAAGACCACTGTTGTCTTTTGCTTTTAGGGAATGCATTTCAGTCCTGTTTTTGAAGACATCAGTGTATAATGTGAGACATTTTTGGTTAGGAAATGTGCATTAATAGAAATCCGGGAGAGTAGTCAAATGTTGGAATTACTGTTTGCGATGTCACACAGCTGGCTTTTTCAATGGTCTCTCTGTGTTGCTGTTTTCCCTTTTGAGCAGTATTGTCCAAACTGCAAATAATCTGGAAACAAAAGTGTCCGATTAGAAGAAATGAATTTACAAAGAGTAAGCAGAGCAAATGTGACTATTTTAGGTTTACTCTCCGATTTCTGTGGCAATGGGGGCCCCTCTTAACTATACTTACCTTTTGGAATTGGACGTGTGTGGGAGATACAGTGTTGGAATGGAATAGGGCTTATTTAAAACCTTTCTGCCATTTTATCCAATTTCAAGAAGAggtaaaaagtaaatgtatgaaataaattataaggaAAGGAAACACTAGTCAATACATCACTGTGTACAACAGATAGTTGTGTCCCACCTTTTAGAAGAAATTGGTTGTATGTGCCTCTTTTGACCTTTCAGGTTGTCACTGTGATGGAAATTATCAATCCATTGCTCACTTTAGACACAAGGATTTGCTTGAGTAGAATAGGTTGTTGATGTGGAGATTTCTCACTCTGTCAGATAACCTTGCCCTCCACTCTTGTCTGTGCTTAAAACCTTTCTTGCGATTTAACAAAACGGTGCCCTGTGTGAATTCAAAAGCAGAAAACGATGGTGTGATAAAAGATGCTGGAGAGTAACAAAGGCCAAAGAGATGCTAGCAACCTCTATGAAGGCAGACCCTCTGTGAATATACTAGCAGtgttaattacaacaaaacagGGATACACCAAGAGGAATGTAATGAAAGCGAAGGAAGTGTATGTACACTTTAGGGTTTCCCACATCCAAACATGCATCTGAAAGAATATTGAGCTGCAAAAGTACAGACATGATACATGAAAAGTTAGCAGTGCAATCTCCCGCAGCTCCCCTTTaactgtgcgtgtgtgcgtgtgcgtgtttgtgtgtgtttatggggTGGGGTCGGGTGGGGTGGGGGACTGACCAGATGTGTTGTTGCTTTTGCCCTTTTGAAACCAGATGGAGAATGTATGCCAGCCATTACATCTGTAACACACTTAACTCTCTCTTGGATTTGTTGCGGTTCTTGGAAGATTTCTGTCTGCCTGCATCTTCTTGCTTCTTGTGTTATTTCCCCATATATCTTTGTGAGCAAGCTGTGGTGAATAAAGGTTTGGGGTTCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110368 lncRNA downstream 308491 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 414492 29838518 ~ 29841539 (-) True G88434
TU110254 lncRNA downstream 975158 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 1424807 28830158 ~ 28831224 (-) True G88245
TU110134 lncRNA downstream 1444066 28811763 ~ 28811965 (-) True G88244
TU110503 lncRNA upstream 159850 30425304 ~ 30425552 (-) True G88545
TU110527 lncRNA upstream 260292 30525746 ~ 30562800 (-) True G88562
TU110628 lncRNA upstream 696249 30961703 ~ 30962096 (-) True G88643
TU110741 lncRNA upstream 1533298 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 1593955 31859409 ~ 31859833 (-) True G88742
AMCG00021793 mRNA downstream 97324 30142222 ~ 30158707 (-) True AMCG00021793
AMCG00021788 mRNA downstream 207160 30047330 ~ 30048871 (-) True AMCG00021788
AMCG00021789 mRNA downstream 210929 30042879 ~ 30045102 (-) True AMCG00021789
AMCG00021786 mRNA downstream 269838 29974986 ~ 29986193 (-) True AMCG00021786
AMCG00021787 mRNA downstream 409653 29842364 ~ 29846378 (-) True AMCG00021787
AMCG00021797 mRNA upstream 19218 30284672 ~ 30285136 (-) True AMCG00021797
AMCG00021801 mRNA upstream 116506 30381960 ~ 30386817 (-) True AMCG00021801
AMCG00021805 mRNA upstream 128925 30394379 ~ 30395918 (-) True AMCG00021805
AMCG00021808 mRNA upstream 160662 30426116 ~ 30428501 (-) True AMCG00021808
AMCG00021807 mRNA upstream 168473 30433927 ~ 30444924 (-) True AMCG00021807
TU110330 other downstream 513223 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 1184271 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 1472750 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 3336187 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 4101656 26152105 ~ 26154375 (-) True G87871
TU110482 other upstream 72129 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 612394 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 864129 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 1797931 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 4081534 34346988 ~ 34380295 (-) False G89004

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020693 True 2102 mRNA 0.42 5 NC_007127.7 16165029 ~ 16182319 (-)
grasscarp (Ctenopharyngodon idella) CI01000054_07607425_07611037.mRNA True 1541 mRNA 0.48 5 CI01000054 7606500 ~ 7611037 (-)