RNA id: AMCG00021798



Basic Information


Item Value
RNA id AMCG00021798
length 618
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00021798
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30379747 ~ 30381378 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTCCAGTGCATAATAAGGTTTTACGAGACATACATAAAGTCATGTTTGTTTCCAAGAGAACAGGAGTCAGAGCCAGTGAAAAAAGACATTCTCATTCACAAAATCATACTGGCTGGCAAAAACATTCGCAACACCAGCCTCTCCCTGGATAAGAGGATACAAGCAGCCTCTGATATTGGAGTCCTGGCTTACACAGGAGGCCGGGTGGCTGCGATGTATGCAGGGGAGTACATGCCCTACCTTGCAGCATTCCTGACAAGGCCTGACCTCTCTACCTCAGCCACCATAACAATCCTGAAGACCCTCAGTGGCATCAGCTACACCCACCATAAAAACCAGCAAAAGGCAATGGACCTGAATCTCTGTGACATGCTTTTAGGCTTCCTACACCAAGAGGAAGACCCTCTTCTGACAGACAGCCCGAAGTCCATTCTAGTGAAGTTCTGGACCTGCTACCTACTGAGTGTGCTTTGCTGGAATAACATCCCCCAGATCAGATTGCTGAGCAACTCACAGAGCCTGAGGAGGGACCTGGAAATTCTGAGGAAGAAAAGATGGGATGACTGGCCTAACAACTATGCCCAGGAACTTGTGGATCTCTTGGGTTTTTCCCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110430 lncRNA upstream 121550 30256024 ~ 30258197 (+) True G88485
TU110394 lncRNA upstream 160251 30142195 ~ 30219496 (+) True G88452
TU110396 lncRNA upstream 240463 30137538 ~ 30139284 (+) True G88454
TU110389 lncRNA upstream 330859 30047128 ~ 30048888 (+) True G88450
TU110374 lncRNA upstream 401188 29975041 ~ 29978559 (+) True G88440
TU110466 lncRNA downstream 85525 30466903 ~ 30468920 (+) False AMCG00021802
TU110586 lncRNA downstream 345906 30727284 ~ 30730868 (+) True G88609
TU110644 lncRNA downstream 666425 31047803 ~ 31048529 (+) True G88655
TU110661 lncRNA downstream 748969 31130347 ~ 31132235 (+) True G88666
TU110674 lncRNA downstream 832931 31214309 ~ 31214669 (+) True G88677
AMCG00021800 mRNA upstream 4548 30347824 ~ 30375199 (+) True AMCG00021800
AMCG00021799 mRNA upstream 79834 30291241 ~ 30299913 (+) True AMCG00021799
AMCG00021795 mRNA upstream 125394 30250083 ~ 30254353 (+) True AMCG00021795
AMCG00021794 mRNA upstream 179229 30185320 ~ 30200518 (+) True AMCG00021794
AMCG00021791 mRNA upstream 253340 30119020 ~ 30126407 (+) True AMCG00021791
AMCG00021803 mRNA downstream 8822 30390200 ~ 30407772 (+) True AMCG00021803
AMCG00021804 mRNA downstream 27238 30408616 ~ 30432115 (+) True AMCG00021804
AMCG00021802 mRNA downstream 68579 30449957 ~ 30467466 (+) True AMCG00021802
AMCG00021810 mRNA downstream 101198 30482576 ~ 30492325 (+) True AMCG00021810
AMCG00021812 mRNA downstream 145654 30527032 ~ 30561697 (+) True AMCG00021812
TU110265 other upstream 997474 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 997474 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 1314408 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 1601014 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 4182671 26152068 ~ 26197076 (+) False AMCG00021703
TU110432 other downstream 7459 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 4545175 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 4656461 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 4829755 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 5583193 35964571 ~ 35967384 (+) False G89299

Expression Profile