RNA id: AMCG00021799


Basic Information

Item Value
RNA id AMCG00021799
length 4373
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00021799
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30291241 ~ 30299913 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTTTGCTCACCTCTGTGAACTGTATGAAGGTAAAGTGGGGGGCGATACTGCAGGTCGTCTCCACTGTGGCCAAGGTCCTCGCCTTGATTGTCATCATTATCGCCGGCCTGGTGAAGCTTGGCCAAGGGAACACTCAAAACTTTGAGGACTCCTTTAGCAACTCCAAGCTAAATGCAGGGGATATGGCGCTGGCTCTGTACTCGGCTCTGTACTCCTACTCTGGGTGGGACACCCTCAACTATGTCACTGAAGAAATCAAGAACCCAGAACGGAACCTGCCATTGGCAATTGCCATTTCAATGCCAATTGTGACTGTTATCTACATCTTGACCAATATTGCTTATTACACTGTTTTGGACCTGGACACAATCTTAGCCAGTGACGCTGTGGCAGTGacCTTTGCAGATGAAGTTCTTGGGTATGTAAAGTGGCTGATCCCGCTGTCGGTGGCCATATCTTGCTATGGTGGATTAAATTCTTCAATTATCGCTGGCTCAagGTTGTTCTTTGTAGGCTCCAGAGAGGGTCACCTGCCTAACATTCTGTGCATGATCCACGTAAGAAGATACACTCCCATTCCAGCCCTGCTTTTCAATGGTGTGATGTCCCTGGTCTACCTCTGTGTGAGGGATGTCTTCCAGCTCATTAACTACTTCAGCTTTAATTACTGGCTGTTCATTGGTCTCTCCATCGCCAGTCAGATATACCTTCGAATCAAACGCCCAGAAATGCCCAGACCGGTCAAGcTGAGCCTGTTTTTTCCAATAGTCTACTGTATCTGCAGCATCTTTCTGGTAGTGATGCCTCTGTACAGTGACACTGTGAACTCCCTGGTGGGAATAGCAGTGGCTCTGTCAGGGGCCCCAGTCTACTACATCTGTGTGCACCTCCCTCCGGAGAGGCGCCCTGCCATCCTTGGCAGACTGCTAGatctcTTCTCCTTGAACACTCAGAAGTTGTGTATGTGCTGCCTAGCTGATCCGGACCTGGACCTGGACAATATCTCTGAATCCAAGCTAGAGTAAAGACTTGCAAGAGAAGCTGCAGCCAGCCTGACGGGAGCACAGTGAGCTGCAAGATCATAAGGAAAGTCTAGTCTTTTATTATGGTTAACTTTTATGAaggcactttttgtttttttttctgttgttggcTTTTTTAGTTGGTAAAATGTAGTTCCAGTGAAACACAATATTGTCAGGCTACATGTTTAAGTAGCAACACGTGggaacattttataaaaaaaatattcttgaacaattattttatttgaaaggaaaagtgtaaaatgtttgCCTGGTTTTAGACACCTGGCAAACGGAGGCTGCTGGGATGTTTTTGGTTGTCGTCCGTCGTGCTCGGCGCTCTCCTGCACTGTGAAGAGGCTTCAAGGCAGCATAAACAACAGGCTATTGAGGGCGATACTCGGTGCCGGAAGCGTGACTATGAACATTATCACTGCAGTGGAGCCCCTTTCTCAACAATGTTCCTCCAACCTCTGTTCTGGGGGGTTGATAGTGAAAGGAACAggaaaggtttgtttttttacatttgattgtttttaagttttgtttcaagtttcttttaaaatgtacatttgaaaagtTCTAGTTCAAAATTCATACTAGAAGAGTCAAAAAAGGACCATCTTAACCAGGTTTGGTTGAGACAGGATACATGTTGTGATAGAGGCATGTTAggattttttcaaaataattattggctttattttattagttcTAGTAGTTTAAACAGTTAAAGGCTGTCTGCTCACTCTTTTGTGATATACTTCTTACACACATTGACCACTCCGGCGAAGGACAAGAAAGTCCCAATGCAGTATTTGGGAATCTCTACGCTCGAAGCAAACATTTGTGTATAATACAAACTTCTGTTCTTCACTGTTCACAAAACATTCTCTTTCGGCAATGCAGCTGGTAATTGCAGTGCACTTTTATCTTTGGTCTTGTACCTCACCATGTAGGGAATGAGGGAGAAGGGTCATTCCAACAGTGTAGAGACTGGATCTCTGCTCTTCATATCcaattgttcttgttttacCATCACaccattacttttttatatttttctacacCGTTAAAATGGGGTATACATTTACAGGACAGCAATAAAGtacacataaattatatatttaacaaattaactttatcagtgtatttaaaatatctattgCATTCAGTTCTCCACAAGCTGAAAATCTCTGAACGAGATCAAACAAAAGGTAAGCTGACGGTTTACAAggcattacaaaaaacaaagctgtgaTTAACTGCATTCATGTCTAAAACCAAAACCATAGATCAtcttatttattgcatttgccACAAAAACATTGTAGAATCTTTTATATGTACCTCTGTGGAAACGTAATGGAAAAACTGCCACCTATGAACATGCTgccaaaaatacaattatttaaatctggAATGACACGCCATATGTCACTGGCCTAGGTTCTCACAACGACCAAAAGGCTGACATGAAAAGTGGTGCAGTATGGGCTTAGCTTGAGTATATTAGGGCTCCAAACCGTGCtaataatggaaagaaaaacaatctatgCCTAGTTTTCCCACTAGGGAGCCTGGCAAACGCAACAAACTAAAAAATCCTGCCACACGGAGCAGAACTATTCCCCCCTGCCTTGCGGAGGGCTCTGGGTGTCTTTTACTCCATCAGTCACTGACACCCAATTCACTCTCATTGGGAAATACTATTAATAAAGGCGGTGGTTGATGCGCTCATTAGATCAAGCGCAGGAATCCCATGGGTCTAATGTCAGGGATTCCCCTGCATTTGCCTATAGTGAGCAAATGGGCCCATGCCCCCCGGTTTTAATCTACGAATATGTACCAATAGAAATTGATATCTCTTATACCTAATAAGCTGAATCACTTTATTCAAACGTACATTTTGTGAATAGCACCTGACAAACAGCAGAGGAAAGCAAAGCCATCTACACTCAGTGTTTAATGGAGCGCATACATGACCAGCCTTTCCCACTTTCCCATGTTCAGCACATTGGCATTGCATGTCCGAAGCAGCGATAGACAGGTACAgttttttattaagatgtgGAACTATTGAGATCTGTGTTGTTTGATTTAGTAATGTCACTGCATTGCAATTGAAAATGCTGCTGATCCAGCAATTGGACTGGCTCATTTTCATCAAGTTCAAAAATGTCCTAAgtagaaactgaaaatgaagtaGCAAAgatttaatgtatgtttgttttttgagggGAGGATTGCGATTTCATCTTTTAACTATTGTAACCTGTATTGCCGACCCTGTAGTATCACATCTAAAGGCTTTGGGTTTCTATTGACACCCTGATTTGTCAgttaaattgtaaaaaatgaCTTCTAAAGTGCCTTTTTTTGTGTAGTTCAAGAATGCCAAAAAATAGTACATAATGGTCAGATTCAGTCATCAAATGTTGAATTTCCTATTTAATACAgattgaataaaaatgtttgtaaaatgacaaacaaCCCATCTGTCTGCTTGAATTTCAATTTCTATACCATGATATAGATACAGATAGCTTTGTCATTATACATATTTAGTCCATTTCCTTCcaatctatatttttaaagagcagCTTTTGTATGTGCCTTCAAACAGAGTTACACTCTGTACTCTGTATTTAGTTTCCTAGAATTGAATGTCCAGTGCTGGTATTAGCTATATGTAACTGTAGTCAGGcaaatatacaatatgtttaaGGCAGCTGGACAGCTCTATAGGATTCATTGATGTTTTCCATAACTTTCTTTACAGTTATCCAGTGTTTTGATTGTATTGATAGAGGGTGGCGAATATATTTTGCAACCCTTACGTTATATAGTCTGAATATGTGAAAAAAGGTTATGGTACACAACTGCCCGATGCTTCTACCTCGTGAATTCATGTCATTCCCCATAGTATCTCATTGTAATTCCCATGGTTCTTAATGTTTGCCACCATTTGTAACTTAAGTGGAGTGTGCATGGGTCCATGACAGTCCGTCCCCGCAACAATCCGTCCCTGTGTCAATTCACCCCCATCATTATACATTCTCCACTTgaagagccatagaacacacatacgtgtatatatagtaggcaggctatttaaatgtatataaatacacacacacacatactttgtattatttattataatgtatgtttttaattgatacattaatttgagactaaccccattaattatttttacaattagtCATGACAGATGGCAGTGACGGCTGCaagctacttaaaataggtttcatgttAAAGCTCTATATTGAACCCAGATCACCAGGTTTGCAGTGCTATTCCCTAACCACTGCAACTGATACAG

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110430 lncRNA upstream 33044 30256024 ~ 30258197 (+) True G88485
TU110394 lncRNA upstream 71745 30142195 ~ 30219496 (+) True G88452
TU110396 lncRNA upstream 151957 30137538 ~ 30139284 (+) True G88454
TU110389 lncRNA upstream 242353 30047128 ~ 30048888 (+) True G88450
TU110374 lncRNA upstream 312682 29975041 ~ 29978559 (+) True G88440
TU110466 lncRNA downstream 166990 30466903 ~ 30468920 (+) False AMCG00021802
TU110586 lncRNA downstream 427371 30727284 ~ 30730868 (+) True G88609
TU110644 lncRNA downstream 747890 31047803 ~ 31048529 (+) True G88655
TU110661 lncRNA downstream 830434 31130347 ~ 31132235 (+) True G88666
TU110674 lncRNA downstream 914396 31214309 ~ 31214669 (+) True G88677
AMCG00021795 mRNA upstream 36888 30250083 ~ 30254353 (+) True AMCG00021795
AMCG00021794 mRNA upstream 90723 30185320 ~ 30200518 (+) True AMCG00021794
AMCG00021791 mRNA upstream 164834 30119020 ~ 30126407 (+) True AMCG00021791
AMCG00021792 mRNA upstream 188111 30093869 ~ 30103130 (+) True AMCG00021792
AMCG00021790 mRNA upstream 199751 30077372 ~ 30091490 (+) True AMCG00021790
AMCG00021800 mRNA downstream 47911 30347824 ~ 30375199 (+) True AMCG00021800
AMCG00021798 mRNA downstream 79834 30379747 ~ 30381378 (+) True AMCG00021798
AMCG00021803 mRNA downstream 90287 30390200 ~ 30407772 (+) True AMCG00021803
AMCG00021804 mRNA downstream 108703 30408616 ~ 30432115 (+) True AMCG00021804
AMCG00021802 mRNA downstream 150044 30449957 ~ 30467466 (+) True AMCG00021802
TU110265 other upstream 908968 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 908968 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 1225902 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 1512508 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 4094165 26152068 ~ 26197076 (+) False AMCG00021703
TU110432 other downstream 88924 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 4626640 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 4737926 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 4911220 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 5664658 35964571 ~ 35967384 (+) False G89299

Expression Profile