RNA id: AMCG00021801


Basic Information

Item Value
RNA id AMCG00021801
length 1674
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00021801
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30381960 ~ 30386817 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATCAGCCCCGCCTACCAGGAGCGGAAGCACGCGAGCAGCTCCGCGCGCGGGACGAGGCGAGCCCGGAGCACGTGACCGCGGCGGCTATAAGGGAACCGCGCGAGCAGACGAGCCCAGTGTGGTAGACTGTGAGAGCGCGCCGTCAAGCTGAGAAAAATGAATTTCATTCCAAAAGCCAGACAGGATGGGGTTAAGCCTTCTGCAAACATAAAGagCTTTTTAACGGGGGGTGTTCAAGAAGGATCTGGAAGAAGAACTTTACAAGTCCTTCAGCCATCTGCAATGAATGGGAACCTGGTTGGAAGAGTAAAAGAGCCAGTGAAGTCCTTCACAAAAAGAAAGTTGTGGAGTGCTGAGCCAAAGGGCTCAAAACGAGTCAAAGCTGAAGTTGCAGTGTACACCGAGgccaatgaaaatgaaaatctgtctGAAGGAATGACAAAGGAGGCATATGAGCTTATGGTCAAAGaaaccCCACCATCCAGCTACTGGAAAGAGGTAGCAGAAGAAAGGCGGAAGGCACTGTATAATGTTCTTcaggaaaatgaaaagTTGCACAAGGAAATTGAATCCAGAGATGAGCAGATCTCTCAGCTGAGGCACGATAATGAAGAACTGCAGGAGCTCGCACAGCATGTTCAGTACATGGCAGATATGATTGAGAGGTTAACGGGGAAGAGTCCAGACAGTCTTGAAGCGCTGAGAGACCTGGATttggaagaggaggatgagcCAGAAGAGGAGGATGAATCGGAAGAGGACCTCAGCAGTGACGAAGAACTGCTGGAGGATGATTGTGAGGATGCTGCTGGAACAGTGTCGGAATCGAACTGAAttaattgactttttttaaaattGGGCACTAAGTGCAAGAAGACCTGTGAAGTGGCACGCGTCAAAACTGTTCTAGTGCTGCTTCACAATTTGAACACCATTGCTCCAGCCTTTTCCAGCAGTTGGCCCTGCCTTGTGAAATAGTggtctggttttatttttaaaagctagtTTGTTGGTCTCCATTCTGCCATAGCTGTTAGAAATTAAGATTTCAAGATTGAGTTCCTTCTTTTGGAGAGGGGAAATTTGGGTGAACAGAGGTTTCAATCTAGCAGAATTGATCTGTTCTACTGCAGGAGTTTATTTAAAGGCAGCTGTAATTTTGAATGTTCTGGTTCTACTTGCCTCTGACTGGCAGATTTTTTGCAAAATGCCATCGCCAACGGTGTTCACTTTAACATTTGACTTGCTTGCATTGTGTTCGACTCTTTAATGATGATATTAAGGATTATACCCACCCTGACAGTAACAATGTTCAGGGTTTTAAGTTCAACATCTGAAACATCAGCTGAGTAGTATATttggctgtatttattttatgtaatgtatggCTGTGAGCAGTTCATTGTCTTGTCTACAAAGACCTGGGATAACTCTTCTGTATTGGAGAACTTAAATAGATTTGTGACTTGCACTGCCATAGTGGGAGGGATTTAATCTTCCTAATGCTAGGATGTATGTTTAAAGGTCCACTGTGCAATATGGGATTGACCAGCTGTCAACTTAAAATGGGTAATGTTCATTGTGCAGTTTTAATGCATCCAATCTGTatatactttacattttgtgaaagatttcatttgtactttaataaatgtgaagattgttttttaa

Function

GO:

id name namespace
GO:0006275 regulation of DNA replication biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
K10749 GMNN; geminin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110368 lncRNA downstream 434420 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 540421 29838518 ~ 29841539 (-) True G88434
TU110254 lncRNA downstream 1101087 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 1550736 28830158 ~ 28831224 (-) True G88245
TU110134 lncRNA downstream 1569995 28811763 ~ 28811965 (-) True G88244
TU110503 lncRNA upstream 38487 30425304 ~ 30425552 (-) True G88545
TU110527 lncRNA upstream 138929 30525746 ~ 30562800 (-) True G88562
TU110628 lncRNA upstream 574886 30961703 ~ 30962096 (-) True G88643
TU110741 lncRNA upstream 1411935 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 1472592 31859409 ~ 31859833 (-) True G88742
AMCG00021797 mRNA downstream 96824 30284672 ~ 30285136 (-) True AMCG00021797
AMCG00021796 mRNA downstream 116506 30256031 ~ 30265454 (-) True AMCG00021796
AMCG00021793 mRNA downstream 223253 30142222 ~ 30158707 (-) True AMCG00021793
AMCG00021788 mRNA downstream 333089 30047330 ~ 30048871 (-) True AMCG00021788
AMCG00021789 mRNA downstream 336858 30042879 ~ 30045102 (-) True AMCG00021789
AMCG00021805 mRNA upstream 7562 30394379 ~ 30395918 (-) True AMCG00021805
AMCG00021808 mRNA upstream 39299 30426116 ~ 30428501 (-) True AMCG00021808
AMCG00021807 mRNA upstream 47110 30433927 ~ 30444924 (-) True AMCG00021807
AMCG00021806 mRNA upstream 75194 30462011 ~ 30469642 (-) True AMCG00021806
AMCG00021809 mRNA upstream 132184 30519001 ~ 30519513 (-) True AMCG00021809
TU110330 other downstream 639152 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 1310200 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 1598679 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 3462116 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 4227585 26152105 ~ 26154375 (-) True G87871
TU110615 other upstream 491031 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 742766 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 1676568 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3960171 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3960171 34346988 ~ 34351125 (-) True G89004

Expression Profile