RNA id: AMCG00021804


Basic Information

Item Value
RNA id AMCG00021804
length 2217
RNA type mRNA
GC content 0.57
exon number 13
gene id AMCG00021804
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30408616 ~ 30432115 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAGCTGCTGGACGCAAGCAGAAGGGGTGTTGTCTGAGCAGTGCTGGCAGGGCGCCTCCTTCTCTGAGACCATCATCTCTCCCAACCTGAAGAGCAGCAACATCCTGCGGGTGCCGGAGGTGGCGACTCTGGCTCAGTGCGCGGGGGCCTGCTGTGACTTCCCGGGCTGCGACCTGGCCTGGCTGTTCGAGGGCCACTGCTACATCGTGAACTGCGAGCGCAAGGAGAACTGCGAGCCCAAGAAGAGGCCTGGCACCGACTCGTACATGACTTTCCTGCAGCACGGGCCTCCCCAGAGTCTGGTGCTGCAGTCCCTGGTTCGCGGACAGCCTTTCCTGGGAAGGGTGCGTCCCCAGGCTGGGCTTAAGAGAACAGAGGGCCTCAAAGACTTGTCCTTGTTTGATGGGGATCAGGGTTTCGAAGACTCAGCCCCAGAAGAGGAGTACAATGAGAGCTACAGGAGTCCTGATGCTGCTGGGGGCTCCGTGGGGGCCAGGGCTGAACAGAAGGAGAGCTCTGGGTATTTAGACTGGCTGGCAGTTGCAGGAAGGGAAGGCTTCAACCTGTCAGAGAGTACTGGGGGCCAAGGGGAGCTGTACTCCCCACAGAGCCCGTCCAAGAGTGCTTTTCTCCTGCACAGCTCCACCCCTCGTGAGGGGGCCCAGGGGAGCACACCCACTCCGCCCGCCCCAGCCTCGCCAGTCTCTGTCAATGGGAGTATAGGTGATGATGTACTTTCAAAAAATGTGTCCTTAATCAGCTTGGAATTGACTCCAGCGTCCCAGAACAGCAGTGCAGATTTAACCCCCCAGAGCCAAATACTGCCTGCACACCCCACCGACACAAGGGTCTCTCCAGTTGCCACCCCGGTCCCCACGCCAGCCCCTGCCACTACTCTTCAGCCAGTGAAGGAGCTGATGGTGTCTGTGGGAGACAACGTGGAGGTGACCCTTCCCAAGAACACAGTGGAGCTCAATGCCTTTGTGGTCCCAGAGCCACCCACAGcagctcgAGTCAATCAATCTCCTGTTGCCATTGTCTCCCCATTGACACAAGAGGTCTCCCTCCCCACCACTTCCACCTTTATTGACGGCAGCCAAAGCACAGATGATGAAAAGATTGTGAGCTACCACTGGGAGAAGGTGAGAGGACCCCTGCAGGAGTACAAAGTATCTGCAGACACTCCCATCCTGCACCTGACTGACCTTGTGCCTGGAAACTACACCTTCAGACTGACAGTGATTGATTCTGACGGGGCTGCAAACTCCACCACAGCCAAAGTGCTGGTGAACAGACCTGTGGACTACCCACCAGTGGCCAACGCCGGACCCAACCAGGCCATCACCTTACCCCATAACTACATCACCCTGAACGGCAATCAGAGCAGCGACGACCACAGCATTGTCAGCTACGAGTGGTCGCTGAGCCCCACCAGCAAAGGAAAAGTGGTAGCAATGCAGgGTGTGAGGACCCCATTTCTCCAGCTGTCAGCAATGCAAGAGGGGGACTACACCTTCCAGTTGACTGTCACTGACTCTGCAAATCAGCAGGCCACAGCCACAGCCACTGTCATTGTGCAAGCAGCTGGAGTTGTATGGCTGGGCTGTGCAGTGTCTGTCAGTGAAGGTGTGAGTGTTGCCCTACCGGGACGCACTTCCACAGTGGCCGTGTCGGTGCTGCAGTCGCCCTTGGAGTCACAGACACGGAGCTGGAATAACACTGTGCTGTCTTTCTATGTGCGGAGCCAGGGGGTGGTCCTGCAGAGCGCAGAGCTGATGCGCACACTGCGGGGCCAGCTGCTGAAGGAGAAGACAGACTTCCTGCTGTTCAGGGTCCTGAGGGTAGACACAGCGGAGTGGAGTGTGCTGTACGTCGCGGTGACAGCGTTCGTGGGTGTGGTCCTCGTGATGGCTCTGAGCTGGGCCTGTTTCTGCTGCTGTAAAAGGAGACGGATTAAAGGGAggaagaaaaccaaatacaccATACTGGACAACATAGACGAGCAGGAGAGGATGGAGCTGAGGCCTAAATACAACATAAAGCACAGGAGCACAGAGCACAACTCGAGTCTTATGATCTCGGAGTCGGAGTTTGAAAGTGAGCAGGACACAATCTTCACTCGGGAAAAGGTGGACAAGGAGAAGTTGAAAACCTGCTCCAACGGCTCTGCACAAAATGGGGATGTGTTCAGTTTCAGGGGTGAAGACCGATAA

Function

GO:

id name namespace
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function
GO:0099094 ligand-gated cation channel activity molecular_function
GO:0022832 voltage-gated channel activity molecular_function
GO:0022834 ligand-gated channel activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0022843 voltage-gated cation channel activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function
GO:0015079 potassium ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110430 lncRNA upstream 150419 30256024 ~ 30258197 (+) True G88485
TU110394 lncRNA upstream 189120 30142195 ~ 30219496 (+) True G88452
TU110396 lncRNA upstream 269332 30137538 ~ 30139284 (+) True G88454
TU110389 lncRNA upstream 359728 30047128 ~ 30048888 (+) True G88450
TU110374 lncRNA upstream 430057 29975041 ~ 29978559 (+) True G88440
TU110466 lncRNA downstream 34788 30466903 ~ 30468920 (+) False AMCG00021802
TU110586 lncRNA downstream 295169 30727284 ~ 30730868 (+) True G88609
TU110644 lncRNA downstream 615688 31047803 ~ 31048529 (+) True G88655
TU110661 lncRNA downstream 698232 31130347 ~ 31132235 (+) True G88666
TU110674 lncRNA downstream 782194 31214309 ~ 31214669 (+) True G88677
AMCG00021803 mRNA upstream 844 30390200 ~ 30407772 (+) True AMCG00021803
AMCG00021798 mRNA upstream 27238 30379747 ~ 30381378 (+) True AMCG00021798
AMCG00021800 mRNA upstream 33417 30347824 ~ 30375199 (+) True AMCG00021800
AMCG00021799 mRNA upstream 108703 30291241 ~ 30299913 (+) True AMCG00021799
AMCG00021795 mRNA upstream 154263 30250083 ~ 30254353 (+) True AMCG00021795
AMCG00021802 mRNA downstream 17842 30449957 ~ 30467466 (+) True AMCG00021802
AMCG00021810 mRNA downstream 50461 30482576 ~ 30492325 (+) True AMCG00021810
AMCG00021812 mRNA downstream 94917 30527032 ~ 30561697 (+) True AMCG00021812
AMCG00021813 mRNA downstream 137087 30569202 ~ 30573271 (+) True AMCG00021813
AMCG00021811 mRNA downstream 185804 30617919 ~ 30678407 (+) True AMCG00021811
TU110433 other upstream 14395 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 14395 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 1026343 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 1026343 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 1343277 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 4494438 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 4605724 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 4779018 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 5532456 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 5532456 35964571 ~ 35967384 (+) True G89299

Expression Profile