RNA id: AMCG00021805


Basic Information

Item Value
RNA id AMCG00021805
length 1165
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00021805
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30394379 ~ 30395918 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attaagtaattgagagctcagctggaacaaaaaccagcagggtaggggctacTCCAGGTCCAGGGTTGGGAGCCACTGGTCTAATCACTGCGGCTTGTGTTGGGTCAATGTCCTGGATGCAGGTGAGCCTGGTGTCGGCCAGCCCAGGCAGGGTGGTGTGTGAGCTGCGAGTGGAGGAGGAGCACACCAACCGCGGCGGCACTCTGCACGGAGGCATGACGGCCACACTGGTGGACGTGGTGTCCACAGTCGCGTTACTGCACACGGAGCGGCAAGCGCCAGGGGTCAGCGTGGACATGAACATCACATACATGAATGCAGCAAAACTGGGAGATGATGTCCTTATCACTGCTCAAGTTCTGAAGCAAGGGAGGACCTTGGCGTTTGCTACAGTAGACATCACTAACAAAGCAACGGGAAAACTCATTGCTCAGGGAAGACACACTAAACATCTTGGCAGCTAAAGGCAACATGGAACATCTGGTTATCACTTAGCTATTAAAAACTGTGCCATATAGTCTGCATAGTGCCTGCTTCAAGTGCCACTGGAGACCAAAGTTTTTGTGGCATCCAAGCACATTAAACAAACTCCTTAAACTGTTGGGACACTCACTCTGTGGACTACTTGTCTGTTGTAAATACTTGCTATTAtctcaaacataaaataaacatagtaTACACAGTAAGAGTTTGAGACCATTCTATTAGACAACTTTTATAACTTGAATTACTTAGATTATGAAAAGATGTTTATATATGGtgaatgatttttttcttttctagtcTGCCCTCCCTTTTAAGTTCATAATCTATTGATTATGCTCAACAGTACAACGCTCAGACTAGTTCTTACAGCATTTATTCTTTGAGGTTAGCACATCAGATCAAGTGTAGGGGATGGGAAAATTTTAAAAGATCTGAATTTTGAGGTTTATGGCCAAATGAAAGTCCACAAATTGTGATCTGTATTTATCCAAAAGAAGTTCCAAAGGCAGTAACCCAGAAATGAGCTATACAACTATGATGCTAGCCAGACCAGGGGAATTACTTGTGCAATATGACATTTCTCTCTGTAAATCTCATAATTGTCCCTAATCCATATGCATTTTTGCTCCAAAATAATCTGCCTGGTTAATATCCACCTGAactgtatatcaaataaatt

Function

GO: NA

KEGG:

id description
K17362 ACOT13; acyl-coenzyme A thioesterase 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110368 lncRNA downstream 446839 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 552840 29838518 ~ 29841539 (-) True G88434
TU110254 lncRNA downstream 1113506 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 1563155 28830158 ~ 28831224 (-) True G88245
TU110134 lncRNA downstream 1582414 28811763 ~ 28811965 (-) True G88244
TU110503 lncRNA upstream 29386 30425304 ~ 30425552 (-) True G88545
TU110527 lncRNA upstream 129828 30525746 ~ 30562800 (-) True G88562
TU110628 lncRNA upstream 565785 30961703 ~ 30962096 (-) True G88643
TU110741 lncRNA upstream 1402834 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 1463491 31859409 ~ 31859833 (-) True G88742
AMCG00021801 mRNA downstream 7562 30381960 ~ 30386817 (-) True AMCG00021801
AMCG00021797 mRNA downstream 109243 30284672 ~ 30285136 (-) True AMCG00021797
AMCG00021796 mRNA downstream 128925 30256031 ~ 30265454 (-) True AMCG00021796
AMCG00021793 mRNA downstream 235672 30142222 ~ 30158707 (-) True AMCG00021793
AMCG00021788 mRNA downstream 345508 30047330 ~ 30048871 (-) True AMCG00021788
AMCG00021808 mRNA upstream 30198 30426116 ~ 30428501 (-) True AMCG00021808
AMCG00021807 mRNA upstream 38009 30433927 ~ 30444924 (-) True AMCG00021807
AMCG00021806 mRNA upstream 66093 30462011 ~ 30469642 (-) True AMCG00021806
AMCG00021809 mRNA upstream 123083 30519001 ~ 30519513 (-) True AMCG00021809
AMCG00021817 mRNA upstream 303431 30699349 ~ 30707723 (-) True AMCG00021817
TU110330 other downstream 651571 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 1322619 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 1611098 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 3474535 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 4240004 26152105 ~ 26154375 (-) True G87871
TU110615 other upstream 481930 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 733665 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 1667467 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3951070 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3951070 34346988 ~ 34351125 (-) True G89004

Expression Profile