RNA id: AMCG00021808


Basic Information

Item Value
RNA id AMCG00021808
length 618
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00021808
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30426116 ~ 30428501 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGAGCTGACATTTCCTGCAGAGAACAGCATACTTGATGGCAGCCACAGCACTGATGACCAGGGGATCGTGTCCTTCCACTGGGACTGTGTTAGTGGCCCACCAGGCGCAAAGATTGAGAATGGAGACGCGGCGCTGGCTACAGTGACCGGCCTCAAGATCGGTACCTACAAGTTCAGACTGACAGTGAAGGACCAGCAAGGCCTGGCCAGTAATGCAGTGGTTACTGTTACTGTCAAGGAAGAGAGCAATGCTTCTCCAGTAGCCCATGCTAGTGGCAGTCACATCCTTTTCCTTCCGAATAACTCCATTGTTCTAGATGGCTCGGCCTCTACGGACGACCAGGGCATTGTGTCTTACCTGTGGGTCCGAGACGGGCAGAGTCCAGCAGCGGGGCTCCGTGTCTGTGACTCCAAGGGCGACTGCAGCACCGACACGGCCACTGTGGAAGTGCGTCCCGACCCCCACAAGAAAGACGAGGTGGAGCTGGAGCTCCAGGTGGGAGTGAGCCAGCTGAGCCTGCAGCAGAGGGACACCGTGCTGAGACAGCTGGCTGTGCTGCTCAGCGTGCTGGACACGGACATCCATATCCAGAGGGTGCAAGCACACACTGACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110503 lncRNA downstream 564 30425304 ~ 30425552 (-) True G88545
TU110368 lncRNA downstream 478576 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 584577 29838518 ~ 29841539 (-) True G88434
TU110254 lncRNA downstream 1145243 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 1594892 28830158 ~ 28831224 (-) True G88245
TU110527 lncRNA upstream 97245 30525746 ~ 30562800 (-) True G88562
TU110628 lncRNA upstream 533202 30961703 ~ 30962096 (-) True G88643
TU110741 lncRNA upstream 1370251 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 1430908 31859409 ~ 31859833 (-) True G88742
TU110768 lncRNA upstream 1560273 31988774 ~ 31989050 (-) True G88762
AMCG00021805 mRNA downstream 30198 30394379 ~ 30395918 (-) True AMCG00021805
AMCG00021801 mRNA downstream 39299 30381960 ~ 30386817 (-) True AMCG00021801
AMCG00021797 mRNA downstream 140980 30284672 ~ 30285136 (-) True AMCG00021797
AMCG00021796 mRNA downstream 160662 30256031 ~ 30265454 (-) True AMCG00021796
AMCG00021793 mRNA downstream 267409 30142222 ~ 30158707 (-) True AMCG00021793
AMCG00021807 mRNA upstream 5426 30433927 ~ 30444924 (-) True AMCG00021807
AMCG00021806 mRNA upstream 33510 30462011 ~ 30469642 (-) True AMCG00021806
AMCG00021809 mRNA upstream 90500 30519001 ~ 30519513 (-) True AMCG00021809
AMCG00021817 mRNA upstream 270848 30699349 ~ 30707723 (-) True AMCG00021817
AMCG00021816 mRNA upstream 280324 30708825 ~ 30719230 (-) True AMCG00021816
TU110482 other downstream 1504 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 683308 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 1354356 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 1642835 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 3506272 26911474 ~ 26919844 (-) False AMCG00021723
TU110615 other upstream 449347 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 701082 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 1634884 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3918487 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3918487 34346988 ~ 34351125 (-) True G89004

Expression Profile