RNA id: AMCG00021809


Basic Information

Item Value
RNA id AMCG00021809
length 513
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00021809
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30519001 ~ 30519513 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgccgtGTCGAAAGGAGAACTACATCCTCCTGGAGCAGAGCGTCACGGTGGACTCGAAAGAGGTCGACGCTCTGGTCACCAAGATCGGCGAAGCCCTGCAGCTGCACAACAATACTACGGGTGCGCATCAGAAGACGGCGTCCTGCCTTCAtcacagtaacaacaacaacaacacccgCCTCGGCAGCGCCAAGCAGCCGggcaaccacaaccacaaccgCGGCTCGGCGCTGTACCGGCGGGCCGGCTGCTGCATTCGGCTCCGGAATCGCAGCGTCCGGAGCCGGGCCAGCCCCTACTGCGTCCCGGGGGAGAGCGACCAAGAATGGGACAGTTTGAGAGCCtggaacagaaagaaaatcGACGTGTCCAGCCAGCAGGACGACCCCCACCAGCTGCTCCAGGAGTTGATTTTGTCGGGGAATCTGATCAAGGAGGCGGTCAGGCGGCTGCAGCTCTCCGCGGCGGAGCGTGTGGATCATCCCAAATCCGCCGACAATCTGCAGTGCTGA

Function

GO: NA

KEGG:

id description
K03096 FRAT2; frequently rearranged in advanced T-cell lymphomas 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110503 lncRNA downstream 93449 30425304 ~ 30425552 (-) True G88545
TU110368 lncRNA downstream 571461 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 677462 29838518 ~ 29841539 (-) True G88434
TU110254 lncRNA downstream 1238128 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 1687777 28830158 ~ 28831224 (-) True G88245
TU110527 lncRNA upstream 6233 30525746 ~ 30562800 (-) True G88562
TU110628 lncRNA upstream 442190 30961703 ~ 30962096 (-) True G88643
TU110741 lncRNA upstream 1279239 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 1339896 31859409 ~ 31859833 (-) True G88742
TU110768 lncRNA upstream 1469261 31988774 ~ 31989050 (-) True G88762
AMCG00021806 mRNA downstream 49359 30462011 ~ 30469642 (-) True AMCG00021806
AMCG00021807 mRNA downstream 74077 30433927 ~ 30444924 (-) True AMCG00021807
AMCG00021808 mRNA downstream 90500 30426116 ~ 30428501 (-) True AMCG00021808
AMCG00021805 mRNA downstream 123083 30394379 ~ 30395918 (-) True AMCG00021805
AMCG00021801 mRNA downstream 132184 30381960 ~ 30386817 (-) True AMCG00021801
AMCG00021817 mRNA upstream 179836 30699349 ~ 30707723 (-) True AMCG00021817
AMCG00021816 mRNA upstream 189312 30708825 ~ 30719230 (-) True AMCG00021816
AMCG00021818 mRNA upstream 211142 30730655 ~ 30741775 (-) True AMCG00021818
AMCG00021819 mRNA upstream 248221 30767734 ~ 30768744 (-) True AMCG00021819
AMCG00021820 mRNA upstream 358475 30877988 ~ 30888588 (-) False AMCG00021820
TU110482 other downstream 94389 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 776193 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 1447241 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 1735720 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 3599157 26911474 ~ 26919844 (-) False AMCG00021723
TU110615 other upstream 358335 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 610070 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 1543872 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3827475 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3827475 34346988 ~ 34351125 (-) True G89004

Expression Profile