RNA id: AMCG00021810


Basic Information

Item Value
RNA id AMCG00021810
length 1458
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00021810
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30482576 ~ 30492325 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCATGACCAGCTGTTCCTCCAGCCCAGCGGAGTTCTGTGGGGAGAGCGCCTCCCTCCTGTCTCTGGATTCCAGCGTGTTTTTCAGTGAGGCCTCTCCCAATGAGAACCCTCTAGATTTTTATATCATCAATGTTGGGGGCAGCAGGTATGTATTGTCCCAGGAGCTGCTCTCCTCCTACCCAGAAACACGCCTAGGCAAGCTGGCTTTATCGAAGCGAGATTCTGTGTTGGATCTCTGTGACGATGCCAACTTGCTGGAGAACGAGTACTTCTTCGACAGGAACTCGCAGACCTTCAAGTACATAATGAATTACTACAAAACAGGCCGCTTGCACGTCATGGAGGAGCTGTGCGCCATGTCTTTCCTGCAGGAGATCGAGTACTGGGGCATCGATGAGCTCTGCATTGATTCCTGCTGCCGAGACAAGTACTACAGGAGGAAGGAGGTGAAGGAGACACTGGACATGCACAAGGACACCGAGGTCATCGAGAGCGAGGACGAGGACTTTTCCGATGTCGTCTGTGAAAACCTTAGGCAAAAACTGTGGGACGTCATGGAGAAACCTGAGTCTTCTGTGGCCGCCAAAACCTTCGGCACACTGTCCATTGTTTTTGTGTCCGTTTCAATCATAAACATGGCTCTGATTTCCCTGGACTTCAGCTCTCTGGAGCCGCCATTTCTCGACGTGCTGGAATACATCTGTATAACCTGGTTCACCGGGGAGTTTGCCCTGCGGTTCTTGTGCGTTAAGGACAAGTGCAAGTTCAGCAGGAGTGTGATCAACATTATTGATCTTGTCGCCATCTTGCCCTTTTATGTCACCCTCGCTGTGGAGAATCTGCACGGAGGCTCCACTGAACTGGAAAACGTGGGCCGAGTTGTGCAGGTGTTGAGACTGATGAGGTCACTGAGAATGCTCAAACTAGGCCGACATTCCACAGGACTCAAGTCCCTTGGCATGACTATTGCCCAATGCTATGAAGAGGTGGGActcctcctcctgttcctctCTGTGGGGATATCAATCTTCTCAACAGTAGAGTATGCTGTGGAACACAATGTCCCCGACACGACCTTCATCAGTGTACCCTATGCCTGGTGGTGGGCCACTACTTCAATGACTACCGTGGGCTATGGTGACATCAGACCCGACACCACTTTGGGCAAGATCATCGCCTTCCTCTGCATCTTATCTGGCATCCTCATCCTTGCTCTGCCCATTGCTATCATAAACGACCGCTTCTCTGCCTGCTACTTCaccatgaagatgaaggaagcGGCGTTACGGCATCGCGAGGCATTGAAGAAGCTGAACAAGAACTCCAGCTCTGACGTGGCAGTCAACGTCAACCTGCGGGACATCTACGCCCGCAGCATAATGGAGATGTTGCATTTGAAAGGCAGGGAGAGGGCCAGCACCAGGAGCAGTGGAGGAGATGACTCATGGTGGTAG

Function

GO: NA

KEGG:

id description
K04934 KCNV1, KV8.1; potassium channel subfamily V member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110466 lncRNA upstream 13656 30466903 ~ 30468920 (+) False AMCG00021802
TU110430 lncRNA upstream 224379 30256024 ~ 30258197 (+) True G88485
TU110394 lncRNA upstream 263080 30142195 ~ 30219496 (+) True G88452
TU110396 lncRNA upstream 343292 30137538 ~ 30139284 (+) True G88454
TU110389 lncRNA upstream 433688 30047128 ~ 30048888 (+) True G88450
TU110586 lncRNA downstream 234959 30727284 ~ 30730868 (+) True G88609
TU110644 lncRNA downstream 555478 31047803 ~ 31048529 (+) True G88655
TU110661 lncRNA downstream 638022 31130347 ~ 31132235 (+) True G88666
TU110674 lncRNA downstream 721984 31214309 ~ 31214669 (+) True G88677
TU110746 lncRNA downstream 1366510 31858835 ~ 31859037 (+) True G88741
AMCG00021802 mRNA upstream 15110 30449957 ~ 30467466 (+) True AMCG00021802
AMCG00021804 mRNA upstream 50461 30408616 ~ 30432115 (+) True AMCG00021804
AMCG00021803 mRNA upstream 74804 30390200 ~ 30407772 (+) True AMCG00021803
AMCG00021798 mRNA upstream 101198 30379747 ~ 30381378 (+) True AMCG00021798
AMCG00021800 mRNA upstream 107377 30347824 ~ 30375199 (+) True AMCG00021800
AMCG00021812 mRNA downstream 34707 30527032 ~ 30561697 (+) True AMCG00021812
AMCG00021813 mRNA downstream 76877 30569202 ~ 30573271 (+) True AMCG00021813
AMCG00021811 mRNA downstream 125594 30617919 ~ 30678407 (+) True AMCG00021811
AMCG00021815 mRNA downstream 187511 30679836 ~ 30699364 (+) True AMCG00021815
AMCG00021814 mRNA downstream 252279 30744604 ~ 30753264 (+) True AMCG00021814
TU110433 other upstream 88355 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 88355 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 1100303 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 1100303 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 1417237 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 4434228 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 4545514 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 4718808 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 5472246 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 5472246 35964571 ~ 35967384 (+) True G89299

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_00229474_00234707.mRNA True 1718 mRNA 0.50 2 CI01000016 229422 ~ 234915 (+)