RNA id: AMCG00021812


Basic Information

Item Value
RNA id AMCG00021812
length 3114
RNA type mRNA
GC content 0.47
exon number 20
gene id AMCG00021812
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30527032 ~ 30561697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGTGTGTTTTCCACCTGGAAGACTGTCccgatttttaaaattttaagcATCTACTTTAGGTGAAATGCAAAGCCAAATTAagtagcttttttattttgcagaaacgTGCCTGTGGTGTCTGTTCAGTTTAAAGCCCCTGCTGTCTGCATGGAGCTACTTTGAGCTCTCTAAATCCAGCTGGGGAAATGACAGAGGTGAGACAGAGGAAAGAGCAGTCATGCCAAGAATACGAACAGAAGGTTTCAGAGAAAGAGGATTTGGAATGTCCCGCAGATTTACAGAATGAACATCCTGATGAAGAGACAGCGGATCCTGTCTGTCAAGATGCCGAAGAcactaaagaaaaggaaaaggcagATTGTCCAAAGAGTCCACTGGCTAAAAGTTCCCTGAACAACACTGTCTTGCTTCAACGTCTGGTGAAGTTGTTCTTCGGCTGCTTGGCAGCTGTGACATGTGGCATGATGTATGCTGTATACCTCTCAACCTACCATGAAAGGAAATTCTGGTTTTCGAGTAGAcggGAGCTGGAGCgtgaaattacatttcagagtGGCAGTGGAGTgtactactattactacaaaCATATGCTGACCGCGCCTTCCTTTGAAAGGGGGATTTACGAGCTGATGCGCGATAACCGAACGATCTCAACGCAGACCATCAATGCAGTAGAACAGCTGTCTTTGTACCCAGAGCTCATCACTAGCCTTTTATATCGCATTACCGGGAGCCAGGATGTGATCGAGCCTGTTTATTTCTACATTGGGGTGGTATTTGGCCTCCAGGCTGTGTATGTGACTGCCCTGTTCGTGTCCAGCTGGGTCATGAGTGGCACATGGGTGGCAGGAATACTGGCTGTGGCGTGGTATATCATTAACAGgCCTGACACAACCAAGGTGGAGTATGCTATTCCCCTGAGGGATAACTGGGCCTTGCCTTACTTCTCTTGCCAGGTTGCTGCTTTAACCGGCTTCCTTAGAAACAATATAAACTCCGCAACAGAGATGTTCTGCTACCTTCTAATGAGTGCTTCCACCTTCACCTTCATCATGATCTGGGAGCACAGTCACTATGTGCTGTTCATCCAGTGCCTTGCGCTCTTCCTGCTGGACTGCTTTGATCTGGTGCAGCCACGCAAGTTGGCTGACGTGCACAAAGTCTACCTGTGTTCCTTGGCTCTGGCCTATGTCATGCAATTCCAGAATCCCGGCCTGCTGAGCTCTCCGCTGCTGAGCCTCATGACTGGATCCGTGCTTGCGAGGTACTTGCAGCAAAACATGAAGAGAGGTCCCTTTGTAGCCAGGCTCATGAAAATCCTCCTtcgtttttatttggtcttcaCCATTGCAATCACGTTCAGCTATGTTGTAAAGAGAATCATTCCTGTCAATGAAAGTGACCACATATTCAAATTTCTTGAAGTGAAATTTGGACTAAACACCACAACAGATTTTGTCACCAACATGCTATTGTGTCAAGAGGCCTTTCAGACCCCCAGTCAGGACTTCTTCCTCAGGCTGACACAGGCCTCTGTGCTGCCATTCTACATACTGGTCCTGCTGGTTTGCCTTTTCTCCACTGTGCAGGTCATCTACCGGAGGTTAAGTGGGGAGCCTATGAAATCCAACCTCCGCCTGGAAGACGGGCGAATAGGAGAGCAGCCCGAGGTCATCTACCATGTGTTCCACACCCTGCTCTTTGGCGCACTGACCATGGTGTTTGAGGGACTGAAGTACCTGTGGACTCCCTACGTGTGCATGTTTGCTGCTTTCGGTGTGTGCTCTCCTGAACTGTGGATGACGGTGTTCAAGTGGCTGAGGCTGAAGTCTGTCCATCCAGTTGTCCTGGCTCTAATATTGAGTACAGCAGTCCCAACTATAATTGGATTCAGTTTGTGGAGGGAGTATTTTCCCAGAGTCATCACAGAGCTCTCGGAGCTGCAGGAGTTCTATGACCCGGACACGGTGGAGCTGATGAACTGGATAAAAAGACAAGCCCCTGTGGCGGCAGTGTTCGCAGGAAGCCCTCAGCTGATGGGAATTGTGAAACTGTGTTCAGGATGGACGATTTACCAAGTCTATGCAATGAGGTCTGCGGAGGACATTTACAAGATCCTCACATCCTACAAAGCTAGTTACGTGATTGTCGAGGAGGCTGTCTGCAGCGAGATGAGTCAAACAAAGGGTTGCAGAATAAAGGACCTGCTGGATGTTGCTAATGGCCATGTGGTTTACGAAAAAGGAGAGATGTTCACCTTCGCCAAATACGGACGATTTTGCCATGAGATTAAAATGAACTACTCCCCTTACACCAACTACTTCACCAGAGTCTTCTGGAACCTGTCATACCACGTGTACAAGGTCAACACCGTCATTTCATTCCAGTACTGAGGGGCGCACCGGAGCCATCCCTGTCAGCTGGCCCTTTTATTTTGGTCttggtttttaatattattttagaagTTCTTAAGCAGGACTTTGTTGGTGATGCACTGATTTGGAAGTGTGTAATGGCTACCTAACAGGTTGTGTGGTGGAGGGAAAACAAGGCCCAGTCCTTCCCTGCATAACCAAACCCTAAGATGAACTAGTCTTGATTTTATAAAATTCAGCAAAAGCACACTTTTACTGCCTAGCACAAGTTCTTcgggtgtgtgtgggtgtcagagagagagagagagacacacacacatcgacCACACAaccaacaccaccacacagCACTCCGCGTGGGGCTGTTGCCTGTCCTGTCACGGAAAGAGAAACACACCAGGGCTCCAGCAAGGCCGCTCTTTCAGACACGTTTCAACAGTGCTGTCGCTTTGCCCCACAGTCAAAGTGTATCTGATCAAGCGGGCTAGTCCTTTAGATTCCAGCTAGCACAGATGAAAGATTGATGCCGAGATAAAAGGGCTGCCTCAATTTACAGCTTGACATTCTGCTTGAGAGCTGGCTTAGTCCATCACACACTGGTGACggggcttttcttttctttttcctcccctGTTCTTGGTTGGCGTCTTCTTTTTTGTGGTAACCAATATCAAATATTAAAGCATTGgagagaacttttttttttttttttttttttttttaaaaagaacattaaa

Function

GO: NA

KEGG:

id description
K24553 DPY19L; C-mannosyltransferase DPY19L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110466 lncRNA upstream 58112 30466903 ~ 30468920 (+) False AMCG00021802
TU110430 lncRNA upstream 268835 30256024 ~ 30258197 (+) True G88485
TU110394 lncRNA upstream 307536 30142195 ~ 30219496 (+) True G88452
TU110396 lncRNA upstream 387748 30137538 ~ 30139284 (+) True G88454
TU110389 lncRNA upstream 478144 30047128 ~ 30048888 (+) True G88450
TU110586 lncRNA downstream 165587 30727284 ~ 30730868 (+) True G88609
TU110644 lncRNA downstream 486106 31047803 ~ 31048529 (+) True G88655
TU110661 lncRNA downstream 568650 31130347 ~ 31132235 (+) True G88666
TU110674 lncRNA downstream 652612 31214309 ~ 31214669 (+) True G88677
TU110746 lncRNA downstream 1297138 31858835 ~ 31859037 (+) True G88741
AMCG00021810 mRNA upstream 34707 30482576 ~ 30492325 (+) True AMCG00021810
AMCG00021802 mRNA upstream 59566 30449957 ~ 30467466 (+) True AMCG00021802
AMCG00021804 mRNA upstream 94917 30408616 ~ 30432115 (+) True AMCG00021804
AMCG00021803 mRNA upstream 119260 30390200 ~ 30407772 (+) True AMCG00021803
AMCG00021798 mRNA upstream 145654 30379747 ~ 30381378 (+) True AMCG00021798
AMCG00021813 mRNA downstream 7505 30569202 ~ 30573271 (+) True AMCG00021813
AMCG00021811 mRNA downstream 56222 30617919 ~ 30678407 (+) True AMCG00021811
AMCG00021815 mRNA downstream 118139 30679836 ~ 30699364 (+) True AMCG00021815
AMCG00021814 mRNA downstream 182907 30744604 ~ 30753264 (+) True AMCG00021814
AMCG00021824 mRNA downstream 235543 30797240 ~ 30797989 (+) True AMCG00021824
TU110433 other upstream 132811 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 132811 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 1144759 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 1144759 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 1461693 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 4364856 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 4476142 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 4649436 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 5402874 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 5402874 35964571 ~ 35967384 (+) True G89299

Expression Profile