RNA id: AMCG00021813



Basic Information


Item Value
RNA id AMCG00021813
length 804
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00021813
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30569202 ~ 30573271 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGTGAGGAACAGCGGCTCCTGCTGGAATCGGCACTGGACTTTGTGTTAGAGGGGGACAGAGCATCACATTTCCGCTTGGACCACCAAGACAAACACCTGTTTGTGAAGACCACCAAAACTTTAGACAGAGAATTGAAGCCCGTTTACGCTTTGACGCTAAGAGGACCCGCCGGGGTATGTCCTAACAGCACCATGaagatcaaaatcaaaatccatGATGTGAACGACAATAGACCTCGATTCATTAGAGAAAGTCACATCATAGAAGTGGATGAATTGACCCCCATAGGCTCAGAACTGACCCAGCTGTCTGCGCTGGACAGAGACCTTGGAGAAAACAGCAGACTCACTTACTCTGCCTGTCCTGAGAatgaatttgtgtttgttgtccCCCAAAGTGGACGTGTCCTTCTGCTGAAATCCCTCATAGGTATGCGTAAGGTGACTGTCTGTGCTTTGGCTAAAGATAATGGAGCCCTCGCCTTGCAAAGCGAGCCTGCCACTCTTCAGATCCAGGTTAACAGATCTGTCCTGCAGGCGACTGCTTCTAGGGTCAGGACAGCCAGAGCCGTGTCCGAAGAGACGGCCTATACTGTGCATGTGTCCGAAGATGTCAAAGTTGGAGACTTGATATTCACCGTCCCCGACCTGAAGTTTGACAAGAAGTGGTTCGAGGTGATCTCCGAGGCAGATTCGCCGGTGCAAATTGAGAGGGACTCAGGGAGGCTGTACATGGCCCAGAGGCTGAAGAGAGCAGTGGACGTTATTGTAAAAATCCAAAACTTAAAAGGTAGgaattga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110466 lncRNA upstream 100282 30466903 ~ 30468920 (+) False AMCG00021802
TU110430 lncRNA upstream 311005 30256024 ~ 30258197 (+) True G88485
TU110394 lncRNA upstream 349706 30142195 ~ 30219496 (+) True G88452
TU110396 lncRNA upstream 429918 30137538 ~ 30139284 (+) True G88454
TU110389 lncRNA upstream 520314 30047128 ~ 30048888 (+) True G88450
TU110586 lncRNA downstream 154013 30727284 ~ 30730868 (+) True G88609
TU110644 lncRNA downstream 474532 31047803 ~ 31048529 (+) True G88655
TU110661 lncRNA downstream 557076 31130347 ~ 31132235 (+) True G88666
TU110674 lncRNA downstream 641038 31214309 ~ 31214669 (+) True G88677
TU110746 lncRNA downstream 1285564 31858835 ~ 31859037 (+) True G88741
AMCG00021812 mRNA upstream 7505 30527032 ~ 30561697 (+) True AMCG00021812
AMCG00021810 mRNA upstream 76877 30482576 ~ 30492325 (+) True AMCG00021810
AMCG00021802 mRNA upstream 101736 30449957 ~ 30467466 (+) True AMCG00021802
AMCG00021804 mRNA upstream 137087 30408616 ~ 30432115 (+) True AMCG00021804
AMCG00021803 mRNA upstream 161430 30390200 ~ 30407772 (+) True AMCG00021803
AMCG00021811 mRNA downstream 44648 30617919 ~ 30678407 (+) True AMCG00021811
AMCG00021815 mRNA downstream 106565 30679836 ~ 30699364 (+) True AMCG00021815
AMCG00021814 mRNA downstream 171333 30744604 ~ 30753264 (+) True AMCG00021814
AMCG00021824 mRNA downstream 223969 30797240 ~ 30797989 (+) True AMCG00021824
AMCG00021822 mRNA downstream 289991 30863262 ~ 30877840 (+) True AMCG00021822
TU110433 other upstream 174981 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 174981 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 1186929 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 1186929 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 1503863 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 4353282 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 4464568 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 4637862 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 5391300 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 5391300 35964571 ~ 35967384 (+) True G89299

Expression Profile