RNA id: AMCG00021821


Basic Information

Item Value
RNA id AMCG00021821
length 2617
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00021821
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31028446 ~ 31039072 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTGGACGGTGCAGTGCTGCAGACGTCTGAGGTCTCATCTTTTCTGTCCTGACAGGTCCAAGGGAAAGAAGTGCTGTTTCAAGCAGAATATGGGACCTTTCCAGGAATACGAGGAACCGAAGGCGCAGGAAAAGGAAAATCTCCGCAGTCGCATCCCTCGGCTGGTTCTCCGCCCTTACCGCCCCAAGGAGAAGGGCTCGCCGCTCTCAGAGTCACCATTTTCGGAAGAGGAGAGCAAGGACTGCGACCTCAGCTCCGACCACTCGAGGAGAACGATCAGTAGTAATAGTTTTTGCTCAGATGATACCGGATGTCCCAGCAGCCACTCTGCTTCCCCTTCAAAATCTCCTTCAGGCTCAGAGAGCAGCCCGATAGGATTTCCTTCTCCAGGTGAAGGgaaggaaaatgtaaagaagGCAAAAACTGATGTCATGGCTGAGTGGAATGCACCTCCAGTTCGGCACAGGAGGGAGCCACGGTCATGCCCGATGAGAGGCAGTGAAGCAGACTTTAGCTCTTCCAGCAGTGCAGGCAGCATCACTACCCGAGAGACTTTAGGGTCGGCATCAGGAGGCAAGAAACCAACTTTCACTCGCAGCCGTGGATCCCATATCAGGAACAGCATCTCCTCGCAGAAGTCCACGGTCAGCCCAGCCACTGCCCGAGACAAGGAGCTCTTCTCCAATCTGTACAGGAATCCGCCCCACGCCGCCTCAtcgaacagcagcagcagcaactctGGCTCTTATAAAGGCGACACCAGCCCCACTATAAGAAGAACCAGCACGGGCAGATACAATTCTTGTGGTGACAACCATGGAATAAAGCCACCAAATCCTGAGCAGTACCTGACTCCACTGCAACAGAAAGAGGTTGCCATTAGACACCTGAAAACAAAGCTGAAGAATTCTGAAAGTAGACTTCATGAAAGGGAAACCGAGATTGAGGAGCTGAAGTCCCAGTTGGGCCGCATGCGGGAGGACTGGATCGAGGAGGAATGCCACCGTGTGGAGGCCCAGCTGGCTCTGAAGGAAGCCAGGAAGGAAATCAAGCAGCTGAGGCAGGTGGTGGAAACCATGAAGAACAGCCTGGTGGAGAAGGACAAAGGCATTCAGAAGTACTTCATCGACATCAACATTCAGAATAAAAAGCTGGAATTGCTGCTGCAGAGCATGGAGCTGGCCCAGAACGGGTCCCTGAGAGACGAGCTGGCTCTTGACTACATCTGCGACTCCCCCCGCAAATCCTTAGTCAAGGGGCACACCAAAATAGACGAGGACCTGGCGCCGGAGGACCAGGCGGCTGAGGAGATGGCGGACAGCGGGCTGCTGGTGAATGACGAGATGGCCAATCGGACGGACATTTTCGACCACATCATGATGTCCACGGTGATTGAACCTAGGGAAGACTCCCAGAACAAGTTGGGTGCAATCAGGTCTGAGCTGCTTGGCAGCACCCTGGATGCCACTGCATTCATGAGCGAGGGCAAGATTGAGGAGAAGGCCATTCAGACTGACATCGTCCCCTACACCCCCGACATGCAAACCCTTCTGATGCATCTCCTGAGATCCAAGGAAACCATCTCCGCTTTCTCCGAATTCCAAAATGCAGAGGCCAAATCGGTGCTGGATTTGACCCCCTGTGATCCGACTTCAGCCATCTTGGTGTCTCCTGAAAAGTCTGAAGATTCGGGCCTAGGCTCAGAATCCATCGATCACCACTTTATGACGGAATTGGATTTCGACGCGATGCCCGAAGAATCGTCTGGAAGCAACCAAGTTCGCTCAGCTGTGGTGGGAAAGAGTTACTGGAGCAGCAGCTTTTTGGTGGATCTTGTGGCGGTGGCTGCGCCCGTGCTGCCCACGGTTGCTTGGTTGTATGCCACCCACAGGGGAAGTGTGGCTCCGGTGTACAACATCGGGGCTCTGATCCGTGGCTGTTGCATTATGGGCTTGCACACACTCCGCCATGTGTCCCCAAATGTCTAAGGCTTTGTCTGCATGCATAGACTAATCAAGAGCACTTCAAAGatcagattttatatatttgcaaggAAATATCTACTTTTCTTTGCCACCCTGTATGCGTTTTATTTGCACTGTTTATAGTTGCCACGGAATGAGGCAAAGAAAGATGTCAGTTGCTCAGAATTCAGTTCTGGTCTAAAATTTAGAGAATGTAATCATCTGGGCAGGTGGTTTCATAGTAGTTTTGTGTTGCTACTTcatgtactttatttttccccctcctgctttttaataaaattatttatttttatgagggGAAATCTTTTTGGAAAGAAAGCAACCATGAACGTGAATGGGGCTGACATGTTTCTTGTGGGACAACTTCATGTACCTGTATTTGTGGTTTGAAACTACCAATGTCTTGTCTTCAATAAAGGCCAAATTTTCCCTGCCAAAGCTTTAATGTTTATAGCCGTTTACATTTAGTGAAGACCTAGGGTTCTCTGGTGATCTGAGCATTTTGTCtcttgtatttgtgtattgaaTTTATTATGCATATATTGATGCTGAAGTTCAAATGATACTTGTTACGTGTCTGAACCATGTGCAATACTGTTTTATGATTTACATTGGTcctaaaaatatt

Function

GO:      GO:0044699

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110586 lncRNA upstream 297578 30727284 ~ 30730868 (+) True G88609
TU110466 lncRNA upstream 559526 30466903 ~ 30468920 (+) False AMCG00021802
TU110430 lncRNA upstream 770249 30256024 ~ 30258197 (+) True G88485
TU110394 lncRNA upstream 808950 30142195 ~ 30219496 (+) True G88452
TU110396 lncRNA upstream 889162 30137538 ~ 30139284 (+) True G88454
TU110644 lncRNA downstream 8731 31047803 ~ 31048529 (+) True G88655
TU110661 lncRNA downstream 91275 31130347 ~ 31132235 (+) True G88666
TU110674 lncRNA downstream 175237 31214309 ~ 31214669 (+) True G88677
TU110746 lncRNA downstream 819763 31858835 ~ 31859037 (+) True G88741
TU110748 lncRNA downstream 820849 31859921 ~ 31860135 (+) True G88743
AMCG00021822 mRNA upstream 150606 30863262 ~ 30877840 (+) True AMCG00021822
AMCG00021824 mRNA upstream 230457 30797240 ~ 30797989 (+) True AMCG00021824
AMCG00021814 mRNA upstream 275182 30744604 ~ 30753264 (+) True AMCG00021814
AMCG00021815 mRNA upstream 329082 30679836 ~ 30699364 (+) True AMCG00021815
AMCG00021811 mRNA upstream 350039 30617919 ~ 30678407 (+) True AMCG00021811
AMCG00021825 mRNA downstream 39112 31078184 ~ 31156314 (+) True AMCG00021825
AMCG00021832 mRNA downstream 215122 31254194 ~ 31255057 (+) True AMCG00021832
AMCG00021833 mRNA downstream 331026 31370098 ~ 31404802 (+) True AMCG00021833
AMCG00021835 mRNA downstream 380434 31419506 ~ 31445655 (+) True AMCG00021835
AMCG00021839 mRNA downstream 543969 31583041 ~ 31584257 (+) True AMCG00021839
TU110433 other upstream 634225 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 634225 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 1646173 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 1646173 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 1963107 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 3887481 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 3998767 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 4172061 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 4925499 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 4925499 35964571 ~ 35967384 (+) True G89299

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042798 True 563 mRNA 0.52 3 NC_007134.7 16638639 ~ 16640839 (+)