RNA id: AMCG00021826


Basic Information

Item Value
RNA id AMCG00021826
length 1212
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00021826
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31221983 ~ 31225381 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atGGAGAATGTATCGTTCATTCAAAATAACCAGACTGTCGGAAACTGGACCGAGCCGAGCACTGAATACAAGGTGGCGAGCACCGTGCTGGTTATCGCCATCTGCGGGATTGGGATTGTGGGCAACATCATGGTGGTTCTGGTGGTACTTACAACCAAACACATGCGGACCCCCACCAACTGCTACCTGGTCAGTCTGGCTGTGGCTGATCTCATGGTGCTGATCGCTGCTGGGCTGCCGAACATCACCGAGAGCTTTTATGGATCCTGGGTCTATGGCTACGTTGGATGCCTGTGTATAACGTATCTCCAGTATCTTGGCATCAATGCCTCCTCTTGTTCCATAACTGCCTTCACCATCGAGCGGTACATTGCAATTTGCCATCCCATTAAAGCCCAGTTTCTCTGTACCCTGTCCAGGGCCAAGAAGATCATCGTGTTTGTCTGGGCTTTCACGTCTTTCTACTGTGTCATGTGGTTTTACCTGTCAGACACCAAGCAGATGATTTACGCAGATGTCACGGTGGTGGTCTGCGCCTACAAAGTGTCCCGAAACCTGTATCTGCCCATCTACTTCTTGGACTTtgccatcttttatgtggtgcCTTTAATGCTGGCCACGATTCTGTATGGACTGATCGCACGAATCCTGTTCCTGAATCCCATCCCCACAGACCCCAAAGAAAATACCAAGAAGTGGAGAAATGAGAGCAGCCACGCAAACCAGACTTTTAGTTCAAAATGTTCCAGTCGCTGTTCCAGTAGCACAGCATCTTCCCGGagacagGTGACCAAGATGTTGGCAGTggtggttgttttgtttgcgCTCTTATGGATGCCCTATCGAACACTAGTTGTGGTCAATTCTTTTCTCACCCAGGCTTACTTAGACACCTGGTTTGTCTTATTCTGCCGAATCTGCATCTACCTTAACAGCGCCATCAATCCCATCATCTACAACGCCATGTCCCAGAAGTTCAGGGCTGCCTTTAAGAAGCTCTGCAAGTGTAAGCAGCAGCATTCTGAGAAGCCAACCACCTACAGCATGGCACTCAATTATAGTGTGATCAAAGACATTTCCAATGGAGAGAGCCTGGATCACTTCACCACAGAGCTAGATGATATGACCGTCACCGAAGAGTTCCTGCCCAGCAAGAAACTATCATTTGATGACACCTGTCTTTCTGGCAAGGTCACTTTCAGCAAGGCGTAA

Function

GO: NA

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110628 lncRNA downstream 259887 30961703 ~ 30962096 (-) True G88643
TU110527 lncRNA downstream 659183 30525746 ~ 30562800 (-) True G88562
TU110503 lncRNA downstream 796431 30425304 ~ 30425552 (-) True G88545
TU110368 lncRNA downstream 1274443 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 1380444 29838518 ~ 29841539 (-) True G88434
TU110741 lncRNA upstream 573371 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 634028 31859409 ~ 31859833 (-) True G88742
TU110768 lncRNA upstream 763393 31988774 ~ 31989050 (-) True G88762
TU110805 lncRNA upstream 869321 32094702 ~ 32094939 (-) True G88795
TU110848 lncRNA upstream 1466890 32692271 ~ 32692496 (-) True G88831
AMCG00021830 mRNA downstream 89803 31129633 ~ 31132180 (-) True AMCG00021830
AMCG00021831 mRNA downstream 113337 31093408 ~ 31108646 (-) True AMCG00021831
AMCG00021829 mRNA downstream 128613 31058059 ~ 31093370 (-) True AMCG00021829
AMCG00021827 mRNA downstream 170799 31042531 ~ 31051184 (-) True AMCG00021827
AMCG00021823 mRNA downstream 193536 31000986 ~ 31028447 (-) True AMCG00021823
AMCG00021828 mRNA upstream 85205 31310586 ~ 31350368 (-) True AMCG00021828
AMCG00021848 mRNA upstream 786061 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021847 mRNA upstream 806307 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021846 mRNA upstream 821729 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021849 mRNA upstream 841884 32067265 ~ 32069115 (-) False AMCG00021849
TU110664 other downstream 89798 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 333771 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 797371 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 1479175 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 2150223 29069201 ~ 29071760 (-) True G88288
TU110795 other upstream 838004 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3121607 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3121607 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 4149635 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 4718371 35943752 ~ 35946984 (-) True G89368

Expression Profile