RNA id: AMCG00021827


Basic Information

Item Value
RNA id AMCG00021827
length 3163
RNA type mRNA
GC content 0.35
exon number 7
gene id AMCG00021827
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31042531 ~ 31051184 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGTGTGACTGCGAGGGTGATGTTTCtcttgcatttaaaatggaaaggcAAACTAGTTAGCAGAATTTAGCAATAGATTGGTGCAGGCTGTCTGTGGTACAGACATGAAACTGGTTGAACACTGTTTATTGCCTGCGACGGACATAGAGTGCAGATTTGATTGATAAGTGCCAGCTGGTCACAAATTTGGAAAAGCCACATCTGGTTGGATAAATACCTGGACAGGGCTTGCGATCTGTCGGGTGTAATTTCCACTATGGCTATCTCTCAGTTCCGCTTATTTAAGATTTGCACATGCCTCGCAACTATTCTCTCCTTctttaaaagattaatatgCAGGTCTGGAAGATTACGAAAACTAAGTGGCGACCAGATCACTTTGCCAACAACGGTGGATTTTTCCTCCGTGCCCAAAGAGccaGAGATAGAAGAATGGAGTTCCTGGGATGAGGATGCCCCCACAAGTATTAAGATTGAAGGAGGGAATGGTACTGTGACCCCCCAACAAAATGACACTGAGACAGATGAGCCTGACTATTTCAAAGACATGACCCCCACCatcaggaaaacacaaaaaATTGTCCTTAAGAAGAGGGAGCCACTAAATTTCATTGTGTCTGATGGTAGTGCCGGATTCTCCAGCAGGCTAGCAGCCACACAGGATATTCCTTTTAACCAGCCTTCTGCTGAATTGGGGGATTTAGACACATGGCAGGAAGATTCCAACGCGTGGGAAGACGAGTCTGATGCTGCCTGGGAAGCTGAAGAAGTTTTAAGGCAGCAGAAAATGGCAGACAGGGAGAAAAGGGCTATGGAACAGCAAAGGAAGAAATTGGAAAAGGAAGCCCAAAGACTAAcaaaaaaggaacagaaaattGCTGTAAAGCTTTCATAACATTTAAGGATCATGGACATGCTGTAAGCCAGAAAAATGCCGCAATTCCGTAATATGTTTCTGTAGAATAATGATTCCTGATGAGTTACTGTTCATTCCCCCACAACCCcttgcatttttaattccaCCACCAACTATTATTTGTGTCATTTCTGGTGTCTATAGAGctaggtttattttaaatttgagcaTTTTTCTGCTGCAGCCATTTTCAGGAACTATTGTACATTTATTCAAATGGACACTTGAAGAACTGGATTGcgttttcttatttataaagCTTGAGACAGGAgattaataatgtttaattcagTCTAATTGAGTTTCATGGGAATTTCATTATCACTTTACTGAGTTACcgtgcttttaaaataaaaactttttatttcattttatttaattttgtttaaatttctCCATCGTGTCCATGTAAACAACTGTAAGACACTGGATTTCACAGAATATGGTGAGTTTTTtcagtgtaaataaaaacaggctAACCGCATTCTTCAGGTGACTGACAGTGTTTGAGGGTGGTGAGTGTAAATAAACTGTctggtttaatgttttaaaaatatccagGAAATATTCTGTAAAATGCTTGCTCTTATTAATACtcttaaacaaatttaaaaagtaaatcacCATGTCTAAACTTCTACTATAGTCACTTCTGTATATAGAAATGAGTTTCTAGACCctgtgattatatattttattaaagactATAACCACACATTCTGTGCTGAAAAAATCCTGCAAACTTAATATTAAGGAACTCGGGGAGCCTTGAAAGCTACTTAACACTAGATTTAAGACTTTTAGTCAGccaaaattattcaaatatctGGTTTCCAAAAGAAAGTTGTGTGGATGTTAGACAAgatggtttatattttatattctcatATGAAGACCATTTAGGCTAAATAGACTGAATTATCAACCTCCATTTATAGGAGTTTCCAATGGATTCCCGCCTTAATCAGAAAGATTTGACTAAGGCTAGACTGACCTCCTTTTCTCTTTGATCATTGACTTCTCTCTAAGATGGCTTGCAGCCAGATACCTGATATTTACCCTCCATTGTATGCGTGTTGAgttcttgtttctttaatataattgtCTTCAAGAGGAATTGTGAACTGCAGGACATCTGGTTTGTAGTCACAGATGAGTGAAACATCAACCTGCATTGATAATGAATGTGCTATTTCAGTTATTAAAGAAACCCAGCCAACTGCTTATACACAAGGGCAACAAATACACAGtattgaaactgaaatgcattaataaatatatataaaagtgaaatCGGTTATCTCAAAAATTTACAATAGTCAATACTTCATTTTTTGGAATTGAACACAAAATACTGTTACAAAGAACTTTGACAGAAAAactgttattttcattgtttcaggGGACTtgcctttttaaattttaaattctaGTTACAATAAAgtgacaaattaataatttagtttatatttttcattttcaataatgtGTAAGTTTTGTAAACTACTATTGGATGTGGTTTTTGCACATTCCTTCCTTATCTGTATGGCAATGGCAATGTTTCTCGAGTCACATTCTCATGTTCAGAATGTTGCAATTCTACCATTAAGTGTAGATTGGAAACAAACTTTAATTTCTGACCTCGTGGCAGTAATGGAAACCTagctataaaacaaagaaacttcGATATAATCTTtccataaaaatatatgaattggAAACTATTTTCATGTCACCTAAAATCTTTGATATTGTATATTGATTCCtgtcattatatttttacacatttccaACATACGTGTATAagatattattttctattaatgtaAGAACATTTTAACTTAGAACAATACAGTTTACATTGTGTAAATCATAAAGATAAGTTCACTAGGTTAGGAATAACATGGTATTTCAAACATAATCCCCATGAAATAAACTATGGTACAAAGAGCATTACCgttattgtcatttttaaataaataagggtCTTTCAGATTCTGTAAGATTGCATAGCAAGTCCTCAGAGCATGTAACTGTTCAAATGCATGCGTATTTGGCTTTGTTAGGCTTTTTTGTTTGAACTTCTTttaataagtgtttttattgcactaagaataaatgtaactgtaatgctaacaacacattttattcaaaacactaactacaatttaaaaaacaatatgttgCTTGATACTTTTATTTTGACTCGCACTATTTCTAAATGAATAACACTAAATagctaaata

Function

GO: NA

KEGG:

id description
K22455 EBAG9; estrogen receptor-binding fragment-associated gene 9 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110628 lncRNA downstream 80435 30961703 ~ 30962096 (-) True G88643
TU110527 lncRNA downstream 479731 30525746 ~ 30562800 (-) True G88562
TU110503 lncRNA downstream 616979 30425304 ~ 30425552 (-) True G88545
TU110368 lncRNA downstream 1094991 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 1200992 29838518 ~ 29841539 (-) True G88434
TU110741 lncRNA upstream 747568 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 808225 31859409 ~ 31859833 (-) True G88742
TU110768 lncRNA upstream 937590 31988774 ~ 31989050 (-) True G88762
TU110805 lncRNA upstream 1043518 32094702 ~ 32094939 (-) True G88795
TU110848 lncRNA upstream 1641087 32692271 ~ 32692496 (-) True G88831
AMCG00021823 mRNA downstream 14084 31000986 ~ 31028447 (-) True AMCG00021823
AMCG00021820 mRNA downstream 153943 30877988 ~ 30888588 (-) False AMCG00021820
AMCG00021819 mRNA downstream 273787 30767734 ~ 30768744 (-) True AMCG00021819
AMCG00021818 mRNA downstream 300756 30730655 ~ 30741775 (-) True AMCG00021818
AMCG00021816 mRNA downstream 323301 30708825 ~ 30719230 (-) True AMCG00021816
AMCG00021829 mRNA upstream 6875 31058059 ~ 31093370 (-) True AMCG00021829
AMCG00021831 mRNA upstream 42224 31093408 ~ 31108646 (-) True AMCG00021831
AMCG00021830 mRNA upstream 78449 31129633 ~ 31132180 (-) True AMCG00021830
AMCG00021826 mRNA upstream 170799 31221983 ~ 31225381 (-) True AMCG00021826
AMCG00021828 mRNA upstream 259402 31310586 ~ 31350368 (-) True AMCG00021828
TU110615 other downstream 154319 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 617919 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 1299723 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 1970771 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 2259250 28781802 ~ 28783281 (-) True G88242
TU110664 other upstream 78399 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 1012201 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3295804 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3295804 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 4323832 35375016 ~ 35395771 (-) True G89217

Expression Profile