RNA id: AMCG00021829


Basic Information

Item Value
RNA id AMCG00021829
length 10005
RNA type mRNA
GC content 0.48
exon number 53
gene id AMCG00021829
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31058059 ~ 31093370 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCACCGAGACCAATGCAACACCACATATTGCAAGGGAAGACAATGACTCTGATACAAtgtctctttaaatttgtcGCAGGCGTGCCGGTGAATGTTTCAGATTTGGATCTACAGTACATTCTGCAGGGGATCCCTGAAATGGGCCGAATCCAAGTCAGTCACTGGGGAGACTGTAAGGGTTACAATTGGAAAGTGGAATGGCTGTCCAGACCTGGAGACCAACCCCTAATCCAGGTtcatattctgtttgttttcacccATGTGTTTGAAAGGATATCATCaggtttttgtttcttatatgGTTACATGTCGTTACTTATTAGCCCCACCCCTTTCCCCAATCAGATCAATAGCTCATCTGTCACCGGGCCAGCCTGCAGTATACAAGTCAGTGTTGTACAAGAGGGTGGACTTTTCAAACAGAACATCATGGGAGATTATCTGCGAGTGCCTGAGACCAAGCCACAGGTTCAAGTTTTCATCAATGGCATCCCGTCAATGTGTTCTGGTGACTGTGGGTTTCAGTGGAGCGCAGCAAAGACTCCTGTTGTTTCAGATGTCAGCCCAACAGAAGGATCAAATGCTCTAGGAACAATTCTGACCATCACAGGCTCCGGTTTTGGCAGTGGAAATGCCTCAGTTTTGGTGGGAGATACAGAATGTGCAATAATTCAGATGAACAgtaCCTGGATCACCTGTACAGTGGGTAATGCAAGTGCTGGCACCTACCCAGTTTCTCTCAGCTTTGCAGAACTGGGGCTTGCTCTGAATGTTAATGCGTTTAATTTCACCTACCAAATGGGTGTCTTGAACATCTCCCCTTCGTCCGGCAGCATTGCAGGAGGCACGGTTCTCACAGTGTCAGGGTATGCCTTTAGCCAGGACATAATGATTCGTATTGGGTTGAAGATGTGTGCTGTGGTCTCTGCAAGCTTCAATGAACTGAAGTGTAGAACTCCACCTGGAAGCGCCGGTACCGTTACTATGGCTTTGAAAATGGGTGAAACTGAGGTGTCAGTCAACGATCCTTTCACTTACGATGAGTCTAAGACGCctttaattacagaaataagTTCACGGACTACTAATGTAATGGGAAACATGAGTATTTCCATTGGAGGAAGCAACTTTCAGGACCAAACCAGCAGTAGCTCTGTCTCTATTGGCAGTGAAACATGTGAAATACTTGAGTGGTCTTCAAACATCATAACCTGTTCCCTGCCAAAACTTCCTCCTGGCCTATATAATATCTTTGTACAAGTTGGAAACTGGGGATATGCAGCCGTGGGAGCTGGTGTGAATGCTTCcatagaatacattttgaaggtCACAGATGTTTCCCCATTGCAAGGTTCTCTGTATGGGGGTACAAAAGTCATTGTGACTGGATTGGGGTTCAGTGCACAGGCAGAGGACAACACAGTGACTTTTGcTTATGGTGTTGGATATGCATGGAGCCCATCTTCTATGCAGGTGTCTGTTGGAGACACTGTCCAGTGGCAATGGCAGGCTCCCTATTTAGTCAAAGGGCTTGGCTACAGGGTGTTTAGCGTCTCCAACCCCAGTGACACAACCTACGATGGCATTGGGTTCACCAGTGGAGACATCAAAACTGATCTAGgaGTTTTCCGCTATCGCTTCACAGTGCCCGGTGTCTACTATTACAGCAGTGGCTTCCTAGACAACACAAACACGAGATCCATGCAAGGAGTGGTTCAAGTTCAACCAGTGCAACCAAATAGTGGCAGGTTTCAGCTGACAGTGGGAAACATCAGTGCACCAACAGatGTGCAACCCATGATGCCAACAGTGACAGAATGCATATCCACACCTCCAAACTGTTCCCAGTTCCTCGAGGCAGAAGGGGATTTTTCATTCTACTTCTCAGACTGTTACTCTCCAACAATCACTGTCATCAGTCCATCGAGTGGAACGGTCTATGATGTCATACAGATAAAAGGAATGGGTTTCAGCAACACCAGCTGTGCAAATGAGGTGAAAATCGGAGAATATCCTTGCATTGTTATCAATAGCACCATGACAGAAATTAACTGTAACCTGAGCCCAGATAATGGCATGGGTGTAGGAGTTGCAGAACTGGTGTCTGTGCAGGTCAACAACTTGGGCACTGCCATCAACTCCATCGTGAAGGAGTTCAGCCGTCGCTTTGTTCTGTTACCCGTCATTGATTCCATCAGCCCAGACACTGGAGCCACCACAGGACAAACCAGGGTGACCATCCACGGCTCTGGTTTCTCTGGCCAAGCAGACAGTATCGCTGTGACTGTAGCCAAACAACCGTGCTCAATTGTGTCCATTACCTACACAGCCATCACCTGCGACACCTCTCCTTCGACTGTCCAGACAGGGGACATTCAGGTTTCCATGCTCGGAATCTCAGCCATCTGTCACTCCAACTGCACCTTTGAATATTCCGACTCTTTTGTACCCTCCATTTCTAGTGTCTCTCCAGCCATCATCAATAGCAGCTCAACGATTCTGACAATCAGCGGATCAGGATTTGGAAGCCAGCCTGAAGACGTTGCTGTTTTTGTCGATGGTTTGATATTAGAAGTGAGCGCAGTCACCAACACAAACGTGATTTGCACGGTTGGGCCATTATTTGCAGGAGCTCATATCCTGACGGTTGTTGTCATGAGCAAAGGTCTGGCCACGGGCAGCGCCACACTTCAAAGTGTGGCCAGTGCCACCCTCACACCAAACTACGGAAGCGTCAAGGGTGGAACTCCTTTATTCATCATGGGTAATGGCTTTTCTCAGGGCAACACCTCTGTAACTGTAGGGGGCTCCCCTTGCCAGGCTGTTTTTGTGACACCAAGTGAAGTCCAATGCATAACTCCAGCCCACAGTGAAGGGACGGCTGAAGTTAAAATTCAGGTCCTCTCAATCAGCTACCCTACGCTGAACTACATATATGCCTGGTCATATACTCCAAATATCACAGCAGTGAGCCCTGGAACAGGCTCAAGTGGAACAGTGATCACTCTTACAGGCTCAGGGTTTGGCTCAGATCCTGAGCTTGTCTCTGTGACAATCGACGATACTCCCTGCAACGTGTCGGCAGTGACTGATGTGCAGATTCAATGCTCAGTGGGAAACCATGCAGGAGGCACTTTCCCCGTAATGCTCCATCACGTGCTGAAGGGATTTGCTGCCTCAGCTGTTGTCTTCAAGTATGAATTGATACTTGCATCAGTCACACCAGTCGAAGgaaGCTATGGTGGGGGTTCCATTTTGACTCTGCAAGGATCCGGTTTTGACCCTCAGACTTCGCAAGTGCTGGTCTGTAGCCAAGAATGCAATGTCTTGAGCCAGATTTCTACATCCAGCAGCCTTTACTGTGAGGTCCCACCCAGCAATGGTACTGGAACACAACAGGACTGCACTGTCAAGGTCATGAATGGACAGGAATCAGTGAACGTATCGAATGGCTTCTCTTACAAATTGTCCCTGACACCTGTAATCACTGAAGTATCTCCAAGGAGAGGAGGGACAGCAGGAGGCACCAGGCTCACAATTACAGGCTCCAATTTCAGCTTAAATAGCAGTGACATCACAGTCACCATCGCAGGGTCTGAGTGTGACGTACAATCTGCAAACAGCACCCAAATCATCTGTATCACAAATGCGCAACCCAAGACACAGAAGACCAAAGTTAAAGTCTACACTGGCAATAACGGCATTGCAAAGCTGGACAATGCTGATTTCTTCTACATCGACGTGTGGTCCTCCAAATACACGTGGGGTGGGCTGTCACCTCCTGAGATGGGAACCTTTGCTGTGATCACCGAAGGACAAACAATCCTGCTGGATACCAGTACACCTGTATTAAAGATGCTGCTTATTCAAGGTGGAACTCTGTTGTTCGATGAAGCTGATATTGAACTACAGGCTGAAAatattatgatcacagatggtGGAGTTCTTCAGGTTGGCACCGAAGCAGAACCTTTCCAGCACAAAGCCATCATCACACTGCACGGCCACCTCCGCTCACTGGAGCTGCCTGTGTATGGCGCCAAAACCCTGGCAGTCAGAGAGGGGATATTGGACCTCCATGGAATGCCAGTTCCTGTTACTTGGACCCATTTGGCCGAGACGGCCGCCAGTGGCTCTTTAACACTGACCCTGAAGAGAGCTGTGACGTGGAAAGCAGGAGATGAAATTGTTATAGCATCCACTGGTCACAGGCATAGCCAAATTGAAAATGAGGTCAAGAAAATTGCCTCCGTGTCAGCTGATGGCAGGACCCTGAACCTGACAGAACCTCTGAGCTACAGTCATTTAGGGGTCTCTGTCACATTGCCAGATGGAACAGTGTTTGAAGCGAGAGCAGAAGTTGGTCTCCTCACAAGGAATGTTGTGGTCAGAGGGTCAGATAATATTGAATGGAGTGACAAAATAGAGGCCTGCCCAGATGGATTTGACACAGgGGAATTCGCTACCCAAACTTGTTTCCAGGGAAGATTTGGGGAAGAAGCAGGAAGTGATCAGTTTGGAGGTTGCATTATGTTTCACACTCCAAGGCCAAGTGAAAGCCTGGCAATTGGAAGAATTGAGTATGTTGAGGTATTCCATGCTGGGCAGGCCTTTAGACTCGGTCGCTACCCAATACACTGGCACCTGATGGGAGATGTCCAATTCAAATCCTATGTCAGAGGATGTGGGATTCATCAGACGTATAACAGGGCCGTGACCATACACAACACCCACAACCTTCTGGTGGAGAAAAATGTCATCTACGACATCATGGGAGGAGCTTTCTTTATTGAAGATGGGATTGAGACTGGCAACATCCTCCAGTATAACCTGGCAGTCTTTGTGCACCAGAGCACCAGTCTCCTGAATGACGACGTCACACCCGCCGCCTACTGGGTCACCAACCCCAACAACACCATCCGCCATAACGCGGCAGCGGGCGGCACCCATTTTGGCTTCTGGTACCGAATGCACGATAACCCTGATGGCCCTTCTTACGACCCAAACATTTGCCAAAAACGGGTCCCTCTTGGAGAGTTTTTCAACAACACCGTCCACTCTCAAGGCTGGTTTGGGATATGGATTTTCCAGGAGTATTTCCCCATGAAAACAGGAGCCTGTTACTCCTTCGAGCCTGAGCCAGCCATTTTCAATTCACTGACAACATGGAACTGTCAGAAGGGGGCTGAGTGGGTTAATGTGGGGGCTGTCCACTTCAACAATTTCCTGATGGTCAACAATGAAATAGCTGGCATTGAAACCAAGCGCATTATTTCTTCGGCCGTTCGAGGCTGGGGTCAAACAAGTGGGGCCGCGATTACAAACGCCACCATAGTTGGCCATGTGGATGAACTGGGCCTGGGAGTCAACTACTGCACTACCCGGGGAATCATTCTTCCTTTCGACGATGGACTGAGCATCATGTCTGTGAAGTTTCTGCTCTTTGACCGCCCAACATGTGCTGCCATTGGGGTGACGTCAATCGATGGAACATGCACATTCAAATGTGGAGGCTGGAGTGCCCGGTTCAGTGGAATCCAATATTTCAACACTACCAATAAAGCTGGCTTCAGGTGGGAACATGAAGTAGTTTTGATTGACAGCGATGGTTCTCTGACAGGCCAGGCTGACAATAAAGTGGTGCCTCAGAGTGGGCTGCTGGACCCCTCCCATTGTGCACAGAGAGCAGAGTGGAGTATGGGATTTCCAGGGTTTGTGTGCGACTCCACTGTGGGCTTCCACCGAGTTGCCTTCAACAAcccctccccttcctctttACAGGCAAAGAACGTCATCATGTCCAACTCTTATGGCAACAGTGTAGTTCCATACTTAACAAAAAGACTGACCCATGAACCTGGCTGGATGGCTTTACTTCCTGATTCCAACTCCATACATTGGCACTTTGAAAATGTGGATCACATCACTGACATATCCTACAGTTCTATGTTCTATGGGTTCAGGCAACAAGATAATATCATCATCTCCCACAACCTGACCCAACGCCCAGATATGTTCCACATAATTGATGTAAGAAATGAATCAACACACCCTCTGAACTTTAGCAACAACCAAAATGGAGATTGGTACTTCAATGATAACACAACAACTGTATATTACATGGtgtctggaaagaaaaatgtgagaAGCAGACGCTCCACTAGTGTCGACCCCTCCACGTCTGACATAGATGTGGAGTTCTCAGTGTACAGATATTACTATAAGAACTGCATCTCACCTCCTCCGCTTCCTGCATTTCCTCCAATTCCTTCAACTGGCAATCTTGGGACAGTTGGAGAAGGGAGGCCTGAAAACTATgtCTTATGGTCCAATGAGTCATTCTGGAAGTCTTCTCCAGAAAACAACTATGCCGTTCCAAAAGAAGGAGCAGATGTGGTGATACCAGCAGtaATATGGATGGTCTTGGATATTGATGTTCCGTCATTTAACAAAATCACTGTCTATGGAGTATTGGAACTGCCAGACAACATTACTTCCCCAGCTACACTTGCTGTAAACAGTACTTTCACATACAGGAAGATCATCCTCAATGTAACTTACATATCAATCCAGGGTGGCAAACTATTTGCAGGGCGGCAGGACGACCCTTTTAAAGGTGAACTGGAAATCATTTTGAGAGGAAACCACTTTACTCCTGACTGGCCTTTGTCTGAGGTTAACCAGGGAGCAAAGGTGATAGGTGTGTTTGGTGTTCTGGAGCTTCATGGGCTGCCTCGATCCGTGTACCACACCAAACTTGCCAACACAGCCCCAGCCGGCTCCTCCATCATAACTCTAAAAGATGCTGTTGATTGGAAGGTGGGAGATGAGATTGTGATTACAACAACCAGCTATGACCCCTGGCAGACAGAAACCAGAAAGATTGCAATGATTTCAGAAGATGGACAAAGCTTGACCCTCAATAAATCTCTCTCCTATTCACATGCAGgaGAGAATTTCAATGTCACAGGTGGACAACAGTCTTACAGTTTGGCAGGAGAAGTTGGTCTCCTAAGCAGAAACATTAAGATCATCGGTGAAGACTATCCAAACTGGTACCAGGAATCTTTTGGGGCCCGAGTTCTGGTCAGCTCCATCTCATATTCAGGAATTCAGTATAAAGGATATGCCAAAATCAGAAATGTTGAATTCTACCATTCTGGACAGGAAGGCTATCGAGACTACATTGATCCAAGATACTCTGTGGCTTTTGTTAATCTGGGAGAGGTCACAATTAATGACTCCTACGTCCAAGGCTGTGCTTTCCACCATGGATTCTCACCTGCCATTGGGGTTTTTGGAACCGATGGCTTGACTATTGATGACAATGTGATCTACTTCACCGTTGGAGAGGGCATCCGAGTCTGGGgaaataagaacataattaGGAGGAATCTTGTGAGTATGTCTGTATGGCCTGGAACTTATCAAGACAGAGAAGAAACAACAAACACTCTGTGGCACGCTGCCATTGAGGTCAATAATGGCAGGAACAATGTGCTACAAGACAATATTGTGGCTGGTTTCGAAAGAGTGGGATATCGGATCAATGGAGAACCATGTCCAGGTATTTTCAATCCAGTGGAAAGCTGGTACAACAACGAGGTCCATGGAGGCTTGTTTGGAGTGTACATGAACAGAGACGGCCTGACCAACTGCTCTCACATTCAGGGATTCACAGTCTGGAAGTGCTGGGACTATGGCATCTATTTCCAGACAGAAATGAGTGTCCAAATCTCAAACATCACACTAGTAGACAATGGGATGGGAATTATGTCAATCATTTTCACACCTCCCTCCGTGTTGCATCTGTACTCTGACAAAACAGTTCAGATTCAGGATGGTCTGATTGTGGGAAGCAGCCCAAACTTCAACTGCTCCGATGTTCTTAAGGTCACAGATGCCAATGTTAAACTCAGTTCAAGTCACAGAGCACCCCGGCCTCCTACAGGTGGAAGAAGTGGAGTTTGTTGGCCAACTTTTGCCTCGGATCACAATGGCGCACCTGATAAACCTCATGATGGATTGATGAACTACAATGCTATCAGTGGACTTCTGACGGTGACTAATACCGTGTTCGAGAGTTTTCAGAGTGTCTGCTCCAGAGAGAAGAATGTGATATTTATGACCAGTCCTAATAATGAAGACCTACAGCATCCAGTGCATGTTCAAAATCTAACAATAGTCAACAGCACAGAGGATGCCAAGATTTTCATACACAGACCAGATGTGACGttaAGTAAGATAAGTGTAACACTGCATGTTGTCCTCAGGAAGGCAAACCCTTCTGACTGTGTGGATATGGACTGTGATGCAAAGAAGAAAGCTTTGTTGAAGGACCTGGATGGCTCCCTCTTTGGTAATGTGGGAGCTGTGGTTCCCCAGTCAGAGTATCAATGGAACGGGGACAAGCGACACGGCCTGGGCGATTACAGAATCCCCAAAGTTATGCTCACGTATCTGAATGGCAGCCGCATCCCGGTTAACCAGCTGGCACCATATAAAGGCATAATCAGGGATTCCAGCTGCACATACATGACTGAATGGCAGAGCTACAAATGCTTTGGTCTGAACTACGAGATGCTGGCCATTGAGAGTCTCGATGTCGATACAGAGACGAGGAGACTGTCTCCAGTGGCTGTGCTTGGCGATCGTTACATTGACCTCATTAATGGTAAAGACTGTACTGGCCCTCAAGACCATGGCTGGTGTGCAGGATATACGTGTCAGAAAAGagtttctcttttccacagCATTGTGGCTACAAACAAGTCATACGACATTTTCTTCACTAGCACCAGCCCTCAGAAACTGCGCTTCATGCTTCTCAATGCTGACAGCaccaaaGTTGTGCGTGTTGCAGTTTTTTACTCCAGTCCTCAACGTTTAGATGTTTATGTGCAAAATAAACTGGTGGCTCCAACAAATGCCAATTGGAATGACCAAAAAACGGACTACACACTGGATGAGCCTACTTACCCAGGGCAATATGTTCCACAAATGAATTCAACGGTCTACGGCTCGAACTACTTAGACAATGATTACAAGATGCTCAATGTTTTAGTGCGAGGCTCCATTCCAGTGGAAATCCacacctctcctctcctcttcatCTCCTTCCGACTGCCTGCTATGACCATTGAGCAATTCTTTGGGAAAGACTTGTTGAGAAACCTGGCTGCATTCCTCAAAGTCCCCCAGGGCATGATTCGCATCTCAAAGGTGGTGAGGGAGAACAGCAGACGCAGGAGACGGGCAGCTGGCCTTTCAGTCCAAGTGCAGATCAGTCAACCTCCAGTTCAGCAGATCAGCAACAGCTCCAGCACAGATCAACAGAATTATGACCTCTTGAAAACCATTGCCAGTAACATAGGCCAGGCAGCTGTTTCTGGAAATCTGAGCCAATCTATTGGGTTCAATGTTTCTTCTGTGGGCATTACCCCCCCAGTACCTCCACCCACTGACGCAGCTTGGAGCCAGGTGTCTGCACAGGATGTTAGCAGAACAACGCCTGCGGAGAGCTATGTATCAAGTGTGTCTGCTCTGGTCGTGGTTGTTCAGCCTGTAGCTGTAGAGGGGGAACAACTCATGAGACAGCAACCCTGTATCATGGCAGTGGATTCTGGCGGcaactgtgtgtctgtaggaGTCACCACCCTCACCCTGTCAGCAGTGCTCAAAGACTCTAACAGTAGCATAATTCCAGGACTGACAGGGAATAGCACGATCCCCTTCAGCAACTGCTGGGCTAACTACACAGACCTCTCCCTCAATACAACTGgtaCAAACTTGACCCTCACTTTCACACTGAATCAAGTGGAAGCGAAATCAAAGTCCTTCAGCAACAGAGCAGCCGTGGTTAACCCAACAACCTCTACTGCTAACCCAACAGCTCCAAGCGGCAATGattcagaccaaagcagcagcacatCGAGTCTGTATCGCTGCTGTGCGGACAACACGGAGGACAGCGGAGGCTCCAACACGCCCTTCTTTTCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110628 lncRNA downstream 95963 30961703 ~ 30962096 (-) True G88643
TU110527 lncRNA downstream 495259 30525746 ~ 30562800 (-) True G88562
TU110503 lncRNA downstream 632507 30425304 ~ 30425552 (-) True G88545
TU110368 lncRNA downstream 1110519 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 1216520 29838518 ~ 29841539 (-) True G88434
TU110741 lncRNA upstream 705382 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 766039 31859409 ~ 31859833 (-) True G88742
TU110768 lncRNA upstream 895404 31988774 ~ 31989050 (-) True G88762
TU110805 lncRNA upstream 1001332 32094702 ~ 32094939 (-) True G88795
TU110848 lncRNA upstream 1598901 32692271 ~ 32692496 (-) True G88831
AMCG00021827 mRNA downstream 6875 31042531 ~ 31051184 (-) True AMCG00021827
AMCG00021823 mRNA downstream 29612 31000986 ~ 31028447 (-) True AMCG00021823
AMCG00021820 mRNA downstream 169471 30877988 ~ 30888588 (-) False AMCG00021820
AMCG00021819 mRNA downstream 289315 30767734 ~ 30768744 (-) True AMCG00021819
AMCG00021818 mRNA downstream 316284 30730655 ~ 30741775 (-) True AMCG00021818
AMCG00021831 mRNA upstream 38 31093408 ~ 31108646 (-) True AMCG00021831
AMCG00021830 mRNA upstream 36263 31129633 ~ 31132180 (-) True AMCG00021830
AMCG00021826 mRNA upstream 128613 31221983 ~ 31225381 (-) True AMCG00021826
AMCG00021828 mRNA upstream 217216 31310586 ~ 31350368 (-) True AMCG00021828
AMCG00021848 mRNA upstream 918072 32011442 ~ 32018134 (-) True AMCG00021848
TU110615 other downstream 169847 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 633447 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 1315251 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 1986299 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 2274778 28781802 ~ 28783281 (-) True G88242
TU110664 other upstream 36213 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 970015 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3253618 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3253618 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 4281646 35375016 ~ 35395771 (-) True G89217

Expression Profile