RNA id: AMCG00021830


Basic Information

Item Value
RNA id AMCG00021830
length 681
RNA type mRNA
GC content 0.39
exon number 6
gene id AMCG00021830
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31129583 ~ 31132185 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTCAGCAGTGTCGGTACGGCGTGTTACTGGGAGTTGTTTCCCAGGGAGCgaagtaaaaaagaaacacaaaacattgcATGTAACATCAATTAAACCTCAGTGGTTTTTGATAATGCGGTCGGTTTGTTGACACACTCACGAACAAAGGAAGACTGTTAGTCTGTCCATTTACTGGATTCAAAAGTGAAGAACATGAGTAAAGACGCGCAAATGAGAGCAACAATAAACCAGAAACTAATAGAAATGGGTGAACGAGAGCGATTGAAGGAGTTGCTCCGAGCCAAACTTATTGAATGCGGATGGAAGGACCAGTTAAAAGCGCACTGCAAAGatgtGATCCGGGAAAAAGGGTTGGATCATGTGACGGTGGAAGACTTGGTTGCAGAAATCACACCGAAAGGACGAGcTCTTGTACCAGACAGCGTGAAGAAAGAACTTTTGCAGAGAATAAGAGCATTTTTAGCTCAGCATGCCACCCTATGAATGAAACAGTTACtgctattttcttttcattttttctgtttcatttacaaatcaagtgtttttcttttgctataATGCTACAGTTGAAACTAATCAGTGCTACCTTTGTTTTGTCTCTAGTTTTTGATATTGCTGcttttttgcaaaacaattagtgatatataatgcaattttaataataaaacaacattgttca

Function

GO:

id name namespace
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0015031 protein transport biological_process
GO:0016578 histone deubiquitination biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0071819 DUBm complex cellular_component
GO:0000124 SAGA complex cellular_component
GO:0070390 transcription export complex 2 cellular_component
GO:0005643 nuclear pore cellular_component
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K11368 ENY2, DC6, SUS1; enhancer of yellow 2 transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110628 lncRNA downstream 167537 30961703 ~ 30962096 (-) True G88643
TU110527 lncRNA downstream 566833 30525746 ~ 30562800 (-) True G88562
TU110503 lncRNA downstream 704081 30425304 ~ 30425552 (-) True G88545
TU110368 lncRNA downstream 1182093 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 1288094 29838518 ~ 29841539 (-) True G88434
TU110741 lncRNA upstream 666572 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 727229 31859409 ~ 31859833 (-) True G88742
TU110768 lncRNA upstream 856594 31988774 ~ 31989050 (-) True G88762
TU110805 lncRNA upstream 962522 32094702 ~ 32094939 (-) True G88795
TU110848 lncRNA upstream 1560091 32692271 ~ 32692496 (-) True G88831
AMCG00021831 mRNA downstream 20987 31093408 ~ 31108646 (-) True AMCG00021831
AMCG00021829 mRNA downstream 36263 31058059 ~ 31093370 (-) True AMCG00021829
AMCG00021827 mRNA downstream 78449 31042531 ~ 31051184 (-) True AMCG00021827
AMCG00021823 mRNA downstream 101186 31000986 ~ 31028447 (-) True AMCG00021823
AMCG00021820 mRNA downstream 241045 30877988 ~ 30888588 (-) False AMCG00021820
AMCG00021826 mRNA upstream 89803 31221983 ~ 31225381 (-) True AMCG00021826
AMCG00021828 mRNA upstream 178406 31310586 ~ 31350368 (-) True AMCG00021828
AMCG00021848 mRNA upstream 879262 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021847 mRNA upstream 899508 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021846 mRNA upstream 914930 32047110 ~ 32047584 (-) True AMCG00021846
TU110615 other downstream 241421 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 705021 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 1386825 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 2057873 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 2346352 28781802 ~ 28783281 (-) True G88242
TU110795 other upstream 931205 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3214808 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3214808 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 4242836 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 4811572 35943752 ~ 35946984 (-) True G89368

Expression Profile