RNA id: AMCG00021831


Basic Information

Item Value
RNA id AMCG00021831
length 2409
RNA type mRNA
GC content 0.45
exon number 19
gene id AMCG00021831
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31093408 ~ 31108646 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgcCCAGGCAAACCAGTTTAACTTCGGAGCTGGCAATGACAATCTTGGCAACTTAGTCCAGTTAGTTTCTGATACAAGGTCTATCCCATGCGATGTGGAAAAGGATTCAAGCCATGCACAGATGATAACATGCTATACCAGAGCAATGCCCGAAGACAGTTACGTTGTCCAAGTCAGCGTGGATGGAGTGCAAGTCCCTGAAAccTGCACATTACCGGACACCTTTGATTTCAAGTTTAAGCCCTTCAACTGGTTTGCCagagtTTACATTGGAGGAATGCCTTGTGAACTTCTACAACCAAATTCAGACATTCGGTATGGCCTCACATTAGACTCACAGTATAGTACCTGGGGGACAATGATTTGCAAAATGACAGGAACATATGTGGGACATCACAATTTGAGTTTCATTCTGGACAGTGAATTTGGAAGgAGCTTGCCTGACTTGACGCTGTATACCACTTCTTCTTTGAACAAGCTAACTATGTTTCAGAGTTATGCAGAGGTCATTGGAGTTTCTCCTTCCGCGGGCAGCTTACAAGGGGGAACAACCCTGACCATATATGGCCAATACTTTGATGAGACGGACCAGCCAGCACAAGTTCTGGTTGGAGGTGGCAGGGGTCTGAAGCTGGAGGTGTGGAACAACAGTATACCCAACACACTGGATATGGCTATGAATTACAATGCAACCCGGCCTGGCTACTCTGTTACCTGGGTGGATTCCCTGTCCTACAAATGGGCTGATgcatttgacttttttgttgCCAAACTCAGTGGCTTCATAGTCCCCTCAGAAACAGACAACTACTGGTTTGCGGTCAAAGGGGATGACCGCTTTGCACTGTACTTCAGTAAAACTGGAAGTCCTAGTGACAAGGTCAAGATTGCTTGGGATTACTTCGTGCACTCAGAAGTGATGCATTTGCAGGAAGGCAAAGCGTACTATATTGAAGTATGGCTACAGGAATATGCAGGTGTAGCCTTTGTAGATGTTGGCATGTTTAAAGGGAAAAGCTCCTACACCCCACAGCAAACTGCTGAAGCGGTCAACGAGGTTCAACTCATCCAAACAGTGTGCAACAATTTACAAGAAAAGCAGTTTCTGAGACTTGAAAACTGGTCAAAGGGGAATCCAGTGAATGAAGTTCAGAAGGTCACTGTTACCAGCAACTGCACCAGCTCAGACACCTGCTGGTACTCCTATAGACTCATCTATAATTCAGAGAAAACAGCACTGCTTTCCGCGGATGCTTCAGCCGAGCAAattcagaatgtgttaaatGCTCTTTGGTCAATCAAGCCAGATACTGTCCAAGTGACAAAAGTGGACTTAAGTCAAGGATCTGAATATACTGTGACCTTCAACTCACAAAGAgGTGATTTTGAAAGCCTTCAGTATGAGACTTCTGACACTGATGTTAACATCACTGTTGTGGAAGTAACTAAAGGACAGCCCAGTCTAGACACTTTCACAATCAATTGGGATGGGATGCTGTCCAGACCTGTGAGTGCCACTGCATCAGCCACAGAGTTAGGTTACCCGAGTGGAGAGCTTGTCTCAGATTCTGAAGCCTTTTGCGGACGATATTCTCTCAGGAATCCATGGCTTATTTTCAGGTCAACAGACATCCAGGAATCTGGCTCTCCCTATAGAGACATCCCACTGCAGCTGTACAGTATGttttgctttgcATACAAAGGGATTCTGCAGAATATTGTTCAGGTTACGTTTTCttacacaaacactgaaaacGTGATGATCTATACATCCTTTGTGATTCCAACCACTTTTGCCCAAGGAGACGAGTGGCAATACACCTGCATTGATCTTCTGAGTCCTTTGAAAACATCAAACCCTGGAACTGCATATATGCTTCAGTACCTGTATCTCTTCAAGGTGCCATCAAATCAAGATTTCTATGTTGATGCAGTCTACATTGGAAGAATGGCTGCAACATCAACTTTTAatgATATTACAACAGAGAGAAGACCCCCAGCACTGGCCCAGAGAGGTATTTTTCTACAGGATATCATGGTGAACAAGATCCAGGAACCAGCAATATCAAATGCGAGCTTTGAAATCACAGTGACTCCTTACTACTGTGGGTATGATTTACCTTTGCTGGCCATTGCGTTTGCACAGGTTTTTTCCAACGGAAGTACAGAAGAAGCTCTTTATGGTGGCCCCAGCTGGAATGCGGGGGCGGCCATTCATGTGATCAGGACTCAGAGAGCCAGTCCTCCGGTGTCAGGATTCTTCGATGTGGAGATCTATGGGAAACAGATTATAGGTAAATTAACCGCTGGGTCTGGATTTCAATCTCTGAACGTAAAAACTACAACTGACCAGCTAGGCCAACTTTGTGCAACACAATACCCTGCAGAACCCAAGACAAACATAAAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110628 lncRNA downstream 131312 30961703 ~ 30962096 (-) True G88643
TU110527 lncRNA downstream 530608 30525746 ~ 30562800 (-) True G88562
TU110503 lncRNA downstream 667856 30425304 ~ 30425552 (-) True G88545
TU110368 lncRNA downstream 1145868 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 1251869 29838518 ~ 29841539 (-) True G88434
TU110741 lncRNA upstream 690106 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 750763 31859409 ~ 31859833 (-) True G88742
TU110768 lncRNA upstream 880128 31988774 ~ 31989050 (-) True G88762
TU110805 lncRNA upstream 986056 32094702 ~ 32094939 (-) True G88795
TU110848 lncRNA upstream 1583625 32692271 ~ 32692496 (-) True G88831
AMCG00021829 mRNA downstream 38 31058059 ~ 31093370 (-) True AMCG00021829
AMCG00021827 mRNA downstream 42224 31042531 ~ 31051184 (-) True AMCG00021827
AMCG00021823 mRNA downstream 64961 31000986 ~ 31028447 (-) True AMCG00021823
AMCG00021820 mRNA downstream 204820 30877988 ~ 30888588 (-) False AMCG00021820
AMCG00021819 mRNA downstream 324664 30767734 ~ 30768744 (-) True AMCG00021819
AMCG00021830 mRNA upstream 20987 31129633 ~ 31132180 (-) True AMCG00021830
AMCG00021826 mRNA upstream 113337 31221983 ~ 31225381 (-) True AMCG00021826
AMCG00021828 mRNA upstream 201940 31310586 ~ 31350368 (-) True AMCG00021828
AMCG00021848 mRNA upstream 902796 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021847 mRNA upstream 923042 32031688 ~ 32037579 (-) True AMCG00021847
TU110615 other downstream 205196 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 668796 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 1350600 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 2021648 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 2310127 28781802 ~ 28783281 (-) True G88242
TU110664 other upstream 20937 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 954739 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3238342 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3238342 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 4266370 35375016 ~ 35395771 (-) True G89217

Expression Profile