RNA id: AMCG00021833


Basic Information

Item Value
RNA id AMCG00021833
length 1641
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00021833
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31370098 ~ 31404802 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgaatgtaCTTCCTTTCTGCTCTAAAAATGGCGGAGTACGATCTGACCACCAAGATCGCGCATTTTCTGGACCGGCATCTAGTGTTCCCGCTGTTGGAATTCTTGTCCGTCAAAGAGATCTACAATGAAAAGGAACTACTTCAAGGAAAGCTGGATCTTCTCAGCGACACCAACATGGTGGATTTTGCCATGGATGTGTACAAAAATCTGTACCCCGACAAGGAGATTCCCCACtCGTTGAGGGAGAAGAGAACCACCGTTGTGGCTCAACTGAAGCAACTGCAGTCTGAGACAGAACCCATTGTGAAGATGTTTGAAGATCCAGAAACCACAAGGCAGATGCAATCCACCAGggaTGGGCGAATGCTGTTTGATTATCTGGCTGAGAAACATAGCTTCCGCCAGGAGTATTTGGATACTCTATACAGATACGCAAAGTTCCAGTACGAGTGCGGAAATTACTCTGGGGCTGCTGAGTACCTCTATTTCTTCCGTGTTTTGGTCCCTTCTACTGACCGCAATGCTCTGAGCTCACTGTGGGGCAAACTGGCCTCTGAAATTCTGATGCAGAACTGGGAAGCTGCGATGGAAGACCTCACAAGACTGAAGGAGACCATTGAcaacaatTCTGTCAGCTCTCCCCTCCAGTCTCTTCAGCAGAGGACCTGGCTGATCCATTGGTCACTCTTTGTCTTTTTCAACCATCCTAAAGGCAGAGATAACATAATTGAACTCTTCCTTTACCAGCCACAgTATCTTAATGCCATTCAGACCATGTGTCCACACATCCTCCGCTACTTGACCACTGCCGTCATCACAAACAAGGATGTACGGAAGCGGAGGCAAGTTCTGAAAGATCTGGTTAAAGTTATCCAGCAGGAGTCTTATACTTACAAGGACCCGATCACAGAGTTTGTGGAGTGCTTGTATGTGAACTTTGACTTCGACAGTGCCCAGAAGAAACTGAGGGAGTGTGAGTCGGTCCTGGTAAACGATTTCTTCCTCGTGGCTTGTCTGGAGGACTTCATTGAAAATGCTCgtctgtttatttttgagaCCTTCTGTCGAATTCACCAGTGCATCAGCATCAGcatgctGGCAGACAAGCTGAATATGACACCTGAAGAAGCTGAGAGATGGATAGTTAACCTGATTCGTAATGCAAGACTGGACGCAAAAATAGATTCCAAACTGGGTCACGTTGTGATGGGCAACAATGCTGTATCGCCCTACCAGCAAgtgattgaaaaaacaaagagtCTTTCGTTCCGTAGTCAGATGCTGGCTATGAACATTGAGAAGAAGCTTAACCACAACAACAGGAATGAGGTGAGTTTCCTATTTTTAGGTTTAATATGCCAATGTTAATATATCCTGGGTTAGTCTTACTGATATACAGCTAAGATGACTTTAGTTTCTTAAAGCTCTTCTAAGACTTTATTTGCCCTTAACTTAAActtaaacacatatacacagatatTTGAAGATCGAATAGtgtaggtttgtttttcttcaagtgGTTGAAAGATTCAAAGCTTCCCCCCTCATTTGAGTATGCTAGGAACCACTTGACGAGCATTACTTTATCCGGATACCCTCAGGGctgttatttttctccttccctTTAAAGACTAATGGC

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03250 EIF3E, INT6; translation initiation factor 3 subunit E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110674 lncRNA upstream 155429 31214309 ~ 31214669 (+) True G88677
TU110661 lncRNA upstream 237863 31130347 ~ 31132235 (+) True G88666
TU110644 lncRNA upstream 321569 31047803 ~ 31048529 (+) True G88655
TU110586 lncRNA upstream 639230 30727284 ~ 30730868 (+) True G88609
TU110466 lncRNA upstream 901178 30466903 ~ 30468920 (+) False AMCG00021802
TU110746 lncRNA downstream 454033 31858835 ~ 31859037 (+) True G88741
TU110748 lncRNA downstream 455119 31859921 ~ 31860135 (+) True G88743
TU110752 lncRNA downstream 489665 31894467 ~ 31986530 (+) True G88746
TU110767 lncRNA downstream 583982 31988784 ~ 31989051 (+) True G88761
TU110780 lncRNA downstream 624156 32028958 ~ 32029166 (+) True G88771
AMCG00021832 mRNA upstream 115041 31254194 ~ 31255057 (+) True AMCG00021832
AMCG00021825 mRNA upstream 213784 31078184 ~ 31156314 (+) True AMCG00021825
AMCG00021821 mRNA upstream 331026 31028446 ~ 31039072 (+) True AMCG00021821
AMCG00021822 mRNA upstream 492258 30863262 ~ 30877840 (+) True AMCG00021822
AMCG00021824 mRNA upstream 572109 30797240 ~ 30797989 (+) True AMCG00021824
AMCG00021835 mRNA downstream 14704 31419506 ~ 31445655 (+) True AMCG00021835
AMCG00021839 mRNA downstream 178239 31583041 ~ 31584257 (+) True AMCG00021839
AMCG00021836 mRNA downstream 230368 31635170 ~ 31652999 (+) True AMCG00021836
AMCG00021838 mRNA downstream 268232 31673034 ~ 31676400 (+) True AMCG00021838
AMCG00021834 mRNA downstream 299839 31704641 ~ 31711077 (+) True AMCG00021834
TU110433 other upstream 975877 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 975877 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 1987825 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 1987825 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 2304759 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 3521751 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 3633037 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 3806331 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 4559769 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 4559769 35964571 ~ 35967384 (+) True G89299

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000321_02671166_02689684.mRNA True 2325 mRNA 0.44 13 CI01000321 2670522 ~ 2689742 (-)