RNA id: AMCG00021834


Basic Information

Item Value
RNA id AMCG00021834
length 5461
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00021834
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31704641 ~ 31711077 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaagatTAGCATGCCTTATCAGCCAACCTTGTTTACCATCTGCAATGGTCATCGTCTGTGATGAAACATGATCTGTGAAGATTTTTAAGGTGACGGTGTCAGAGAAAGATGATCAAGTGGCAGAAGTGCTTTGAATATTTTCCATCATCATAAACTGCCCCGCTCTCTGTTTAAAAACTAACACTGAGCCAGACAAGAAGCACTCCGACTCGAGAAAGCTAAGGCATAAACTTCAACAGGAAGAGAAGAGCAAAAATGTCCGAATCAAACACCAAAACTAGTCAAAAGAAGCCGCCcaacaaaaatgtgaagaaGTTGCGAACTATAAGCATGGTGTGTAGCTTGGCGAAAAGCTGGCAGAACTGGGTGGcagagaatgaagaaaagcaaGCCAGTGAGCCATCTGGATGGACCCCTTCTGATGATAAAAATGAGAAATCATCCAAGACGCATCCAAGAGCACAAGACAAACGGGGAACGAGCAAACTCACAGTTGACTCTGAGAAGGAGCTTCTCAACTCTAAAATAAGGAGCAAAAAAGTGGTTAAAACCGTGACCAGTAAAGTACAGGAGAAAGGGGTGGGCATTGGATTTTTGACCAACAGGTACCACAAAGAAGCAGATGAGGTGGATAAAAtactgagagagaaaatgtcTCCGACGAGAAGAAGGAAATGCTCCAACCTGGTGTCGGAGCTCACAAAGGGTTggaaagagatggagaaagagaaaaaggatgTCACAGTGGAACTGGAGGAAAACCGGATCAACAGTATGGACTCGGAGGACAGTGGGTTTTCAGAGGGGAATGACAAAATCCAAGAAAGggcagaaaatacagaaatacaagagGAACTAGTTGAAGTTTCATGTGTGAAGATCAAGCGACCTTCTACTACAGTGATCAATAAAGATGTGGACGAAGTCAAAAAGATTAACATTCTTGCCAAGAAATACAGCCCAGTGGGGAACCTAAAGAGCAAGTGGCACGACTGGGCAGAGGAGCACACTGTGAACCAGAAATTGAACCCTTTCAGTGAAGAGTTTGACTACAACCTTTCCATGTCTACTCGGCTGCATAAAGGCGACGAAGGTTATGGGAGGCCCAAAGAAGGCACCAAAACGGCAGAGAGAGCCAAAAGAGCAGAGCAACATATCCACCGTGAGATTAGTGATATGTGTTACATCATCAGAACCATGGTTGACCCGGGGCCTGATGGCAAGACACGGGTGACATTTGGGGAACTGTTCGACAGATATGTACGCATCTCAGACAAAGTTGTTGGAATTCTGATGAGAGCCAGAAAACACGGAAAAGTACACTTTGAGGGAGAGATGTTGTGGCAGGGACGAGACGACCATGTTGTGATTACTCTTTTAGTGTAGATATTTACTTGGTTAGGAGGCCAAAATCCCCAAAGCAGCCCAAAAGGCCCTTGTTCATTCAAGAAAGGTGATatactctttattttttaattcacactTACAGAGGAGTGTTTCCagataaaatagttttttagcCAGTATATTGGTATGAACTGTAACATTTCAGTGAATTTAATGCTTGCACCTACAAATGATTTCTGCTACTTCACAGGCTTGCGGTGACAAGGCCCCATTGTCCCAAATTACCaaatcttttcttattttaagtcAAGTGCTCTTGCGTATGTCACATAAACTATAAAAGATCATCTGCTCTAATGTTGGGTGTCATGGAAAGTTATGTTATCTGACTCAGAAGTCTTAAATTTGTAACCGAATGTAACATGCtaagtaaaagaaaaacttaaGAAAACAGAAAGCGGAATTTCCCAGCTTTGTGTCTCATAAAACTATTTGTTTCTATAATAGAGTCACGTCAAATCTGATAatggctgttgttttttaatctgcaccagTATGGAGCCTGATTTATTCCAGCAGGGatccacaatacattttaaagtttatattcCAACACTTtgcacagaataaaaacaaaaaaggtagaCGAGTCTGTGGAAGAGATCAATTTTCTGCAATGCAGTGCTCCCACAGCTAAGGCCAATTAAAGTGACAAGTGTTTCAAtcgaaaatgaaataaattaatttgtcatCCACTTGGCAGTCGGTGATAAGTCCAAACTATTacataaaaagtgttttattagcCACATAGACATGTgtagaaagaaaacatataaCAGACTCCAGGTTACTAGCGTCgatcaaaatataattcagaTTAATTCAGTTGCTGTTCTAAAGCAATCTATCAGTACTCATTGTCTTCAAAACctgcaacaataacaatctAACAATCTGTATAGCTTAATTAACAGTAGTTTGCAGTAGTGTTATCATAAcaattttaatatcaatatGCTCTTTATGTAGAGAAGGGCAgggaaattgtatttatctaGTATTCAAAGTAAGGGATTCTTGGGAATAACTCACTGACACGttgtgaatatttaatattctgtttCAATGTAGAAATCATCCAAGACGCATCCAAGAGCAGAAacgtaaaatgtatttataaactaTAATAATTCCTGTGGACtatatttctttttctatttttctattgCAAAATGTAGGCtctgtaaattaaaaagctgAGTGTTTTTCACTTTGTCCCTTTATCCTTTTATCCATTTTCAACACTGAATGTGGTGTATTTCgaatcattttttgtttgcgGTTCATTGATTCTTTTAGCATAACTTCGTTTGCCTTTGCTTTAAAATCTAAAGTAGTGCTCCATGTAACTGTGACATTTTCAGATGATGATTGCTGTAGTATATGTCTGGAAAAGTACATGTAATACTCCAATAATTTACAAAGACATTTactatattcattttcatttattacaaaaagcaAGCCTTTGTAGACTTATCTCAGTGACAGGGGCACATACCTGGAAACAGATGACACATAATGATAAACCAAGTTTTGTATTCAACAGAAATAGAGAATAAATAAGGGAAAATACTGCTATGTTTACAAATAGGAAGGCAATCTTCATGTACTTTCCAAAAGTCTTAGTTTGTGTTTCTATTCCCACCAACTAAAATTGATTAACGGTGGAATTGGCTTCGAATGAGCCTGATTTCACTACACAGAGAGCCAATAGTGCTTACATGTCCATTTCTCTAAAAGGTGAGTGGCTGTGTAGCATCTGTTGGTCATTAGAAAGCATCCTTTTGAACATGTATTCCAGTAATTGTTTGattctttgcatttgttttcctttttactgTATTTGACAAACAGCTGTGCCTCCATATGGaatattgtcattttaacaaattaaccaGTGTGTAGTCACTACAGGGCCCCATGCAGGACAAGAAGAGCAACCAATTTTCTTCAATGAATTCATAGctagaaaaatattaatatgatttatatgAATGAAGCATACCATAGCAGGTAGTGTACACCAGGGACCTGGGccattatacatatacaatacatacacattacaGAATAGTGAaatttgtaattgaaatgtgatatgtaaataataataattattattataattacaattataattataatttaaaacagtggTACAGGATAGTTGTCTGGCACAATGTTGTCATTAGTCTGCCTGGTAATGGGATTTTTTCCACTAAGACTTAAAttaaacagcacagcaaaaAGCAACATAATGACACTTTGCTGGGAAATATGATCTACTCTGAATCTATTTTATGAACAACATATCTGTGGGAGATAGTGTCTGGAAACAAtattaagtttatttaatttataccCAAAGCTCAGCTCATACTGTACTCAACATAACACTTAGTATCCAGTAGCAAGGAGGGAATGTTAGAACTTAGATAGTTACTTTGAAGCCCATTTTCTCAATGATGGCAGCACATTTTCACAGTACATCCGGCATCATTAACAGATATAAATAGGAGCCCTCAAAATGAGTCACACTGTAGCAGAGTATTCACCTTAATGCACCTCTGAGAAAGACCTTTGTTAGTCACTTACTTTTCCAAGTCATTACAGGTATTCATTTGGGTCTgaaaaatctataaaacaaCAAGAAGAGTTTAATCTTTGTGTCATCAGTTCCTGTCCAGAATGAAAAAGTgtcacacaaattaaaagagCTCAACCCGAGCTCTGAATAGAGGCTGTTGCTTCACTCACCTACAGTAGTTTGTATTCagtctatatatttattctctGCAGTCCAACCCAATGGAATGGTACATGTTCAGGTGTCAAATGATCAGGCCTGGTCTAACAAACTGATAACTCCTTAACAGAAGAATGTcttcatgtattgttttttaaagaatgagtatcatacatttccatttctaaaAGAATGTATTTACACTTAGTAAGGCAAGTGATTAATTGCATGTTGCATTTTGATAAATCTAGGAACTCATTCATTATGTTGTGCCTGCtatgaaaaacctgaaaagtggaggaagaggaagaagataaacaaataaatataaaaaaggagaaaatctCTAAGCCAGGTTGGGGTTCTGACTAATTGATTCTCGAGTCTCATTCACTGGTAAATCAACCAATTTAATACATTAGAGATCCTTCCAGCCTTATAATCCATCCAAAGTTCAACTCTTAACTGAATTCAGCTTGTGCATGAGTGTTCTTCAAATTGTTATTACTCCTGGAAGTTTTGTAAGAGAATATAAGGCACGATTTCTCAGTTTCATGGGTGCAAGTTTAAGGTGTAGGTTCTAAAGCTAGAtcaaaaaaatcaaaaagatAATATACTCCAATACAGACAAATTGCATGGTTTAAACACACCATTGTAAGTGTCACAACTGTCTGTGCAAACAGCCATAGACATGGAGGACTCAATTGTGGGATGAAGGTGTGTAGCAGTCCAGGTCAAAGAGCTGGCTAACAAGGCAATAGAGGAAAGGCAAAAGCAGTAGTTGGGGGTCACAGGTGGTAGGTCATTCAATCAGGCATACAAACAGCCAGAGGGCAATCCAGGAGTCAAAACACAGGGTGCAAACAAAGGCCAGAAAACCATGTAATCCAAAAACAGGCAGTATGCTTCAAAATGCATGTAAACTGACAAGACTTAACATTACATGCAACTAACAGGGGGTTGAAatacagagcagagggaagcaggggacagggatgtgtgGTGCTGGTCCAACGAGAGAAGAGGGTTGATGgtgcatgtgcacatggtgctgaggaatgttaattgggtgattgatCATTGTGCTGGGAGTGTGAGAGACGGGGTTAGAATTCAGGTGATGAGGACCTCTGTAGgtgaactggggaagtgtggagagcTGATGTAACAGTAAGCATATCACACTATTTGTATGTGCCACTATCAAGCCATATCACTAGATGGCACTTTTTACAGTAAGAATATGAATGCAGTAAAAGCTAtatcatattgttattttcatttatttgtttgtttgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110674 lncRNA upstream 489972 31214309 ~ 31214669 (+) True G88677
TU110661 lncRNA upstream 572406 31130347 ~ 31132235 (+) True G88666
TU110644 lncRNA upstream 656112 31047803 ~ 31048529 (+) True G88655
TU110586 lncRNA upstream 973773 30727284 ~ 30730868 (+) True G88609
TU110466 lncRNA upstream 1235721 30466903 ~ 30468920 (+) False AMCG00021802
TU110746 lncRNA downstream 147758 31858835 ~ 31859037 (+) True G88741
TU110748 lncRNA downstream 148844 31859921 ~ 31860135 (+) True G88743
TU110752 lncRNA downstream 183390 31894467 ~ 31986530 (+) True G88746
TU110767 lncRNA downstream 277707 31988784 ~ 31989051 (+) True G88761
TU110780 lncRNA downstream 317881 32028958 ~ 32029166 (+) True G88771
AMCG00021838 mRNA upstream 28241 31673034 ~ 31676400 (+) True AMCG00021838
AMCG00021836 mRNA upstream 51642 31635170 ~ 31652999 (+) True AMCG00021836
AMCG00021839 mRNA upstream 120384 31583041 ~ 31584257 (+) True AMCG00021839
AMCG00021835 mRNA upstream 258986 31419506 ~ 31445655 (+) True AMCG00021835
AMCG00021833 mRNA upstream 299839 31370098 ~ 31404802 (+) True AMCG00021833
AMCG00021837 mRNA downstream 44276 31755353 ~ 31763003 (+) True AMCG00021837
AMCG00021841 mRNA downstream 158995 31870072 ~ 31871025 (+) True AMCG00021841
AMCG00021840 mRNA downstream 243510 31954587 ~ 31981028 (+) True AMCG00021840
AMCG00021842 mRNA downstream 348039 32059116 ~ 32065047 (+) True AMCG00021842
AMCG00021843 mRNA downstream 371057 32082134 ~ 32092685 (+) True AMCG00021843
TU110433 other upstream 1310420 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 1310420 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 2322368 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 2322368 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 2639302 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 3215476 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 3326762 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 3500056 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 4253494 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 4253494 35964571 ~ 35967384 (+) True G89299

Expression Profile