RNA id: AMCG00021841



Basic Information


Item Value
RNA id AMCG00021841
length 954
RNA type mRNA
GC content 0.50
exon number 1
gene id AMCG00021841
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31870072 ~ 31871025 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGGCCAAAAAACGCTATTTAATCCTGCTCTCCGCCGGCGCCTGTCTTGTGCTACTGTTCTACTTTGGAGGCGTACAAGTTGCAGCTCCGAGAAACCCGAACCGGCGTGAAGATCACAGCCGACATGGCTCTCACCCGGATCAGCCCTGGCCCCACTTCTCCGACCATTTACAACCCTTTCTTCCCTGGGATCAGTTGGACAACGAGGATTACAATATGCACATCTCGCCCAGACAGAAGAGGGACGCCAACTCCAGCGTCTACAAAGGCAAACGGTGTCGCATGGAGTCTTGCTTTGATTTCTCCCTGTGCCAGAGAAACGGCTTTAAAGTTTATGTCTACCCCCAGCAGAAAGGGGAGAAGATCTCGGAAAGTTATCAGAACATTTTATCGGCCATCGAGGCATCTCGCTTTTACACCTCTGATCCCGGCCAAGCCTGCTTGTTCGTCCTCAGTTTGGATACTTTGGACAGAGACCAGCTCTCCCCCCAGTACGTAcataatctgaaaacaaaagtcCAAAACTTGCATCTCTGGAACAATGGTAGgaatcatttaattttcaatttgtattcgGGAACCTGGCCAGATTACACGGAAGACTTGGGCTTCGATATTGGGCAAGCTATGTTAGCGAAGGCCAGCATCGGTACTGAAAACTTCAGACCCAATTTCGATGTGTCCATCCCGTTGTTTTCGAAAGATCACCCCAGGACAGGAGGGGAACGGGGTTTTCTGAAGTACAATTCGATCCCCCCCTTTAGGAAATATATGCTCGTGTTTAAGGGGAAGAGGTACTTGACTGGAATCGGGTCCGACACAAGGAATGCCTTATACCACGTCCACAACGCCGAGGACGTGGTCCTTTTGACAACCTGCAAACACGGGAAAGACTGGCAAAAGCACAAGGATGCGCGGTGTGATAAGGACAACGCGGAGTATGACAAGTAA

Function


GO: NA

KEGG:

id description
K02366 EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110748 lncRNA upstream 9937 31859921 ~ 31860135 (+) True G88743
TU110746 lncRNA upstream 11035 31858835 ~ 31859037 (+) True G88741
TU110674 lncRNA upstream 655403 31214309 ~ 31214669 (+) True G88677
TU110661 lncRNA upstream 737837 31130347 ~ 31132235 (+) True G88666
TU110644 lncRNA upstream 821543 31047803 ~ 31048529 (+) True G88655
TU110752 lncRNA downstream 23442 31894467 ~ 31986530 (+) True G88746
TU110767 lncRNA downstream 117759 31988784 ~ 31989051 (+) True G88761
TU110780 lncRNA downstream 157933 32028958 ~ 32029166 (+) True G88771
TU110786 lncRNA downstream 194258 32065283 ~ 32067407 (+) True G88776
TU110850 lncRNA downstream 934293 32805318 ~ 32805877 (+) True G88833
AMCG00021837 mRNA upstream 107069 31755353 ~ 31763003 (+) True AMCG00021837
AMCG00021834 mRNA upstream 158995 31704641 ~ 31711077 (+) True AMCG00021834
AMCG00021838 mRNA upstream 193672 31673034 ~ 31676400 (+) True AMCG00021838
AMCG00021836 mRNA upstream 217073 31635170 ~ 31652999 (+) True AMCG00021836
AMCG00021839 mRNA upstream 285815 31583041 ~ 31584257 (+) True AMCG00021839
AMCG00021840 mRNA downstream 83562 31954587 ~ 31981028 (+) True AMCG00021840
AMCG00021842 mRNA downstream 188091 32059116 ~ 32065047 (+) True AMCG00021842
AMCG00021843 mRNA downstream 211109 32082134 ~ 32092685 (+) True AMCG00021843
AMCG00021850 mRNA downstream 267547 32138572 ~ 32146026 (+) True AMCG00021850
AMCG00021844 mRNA downstream 322252 32193277 ~ 32219473 (+) True AMCG00021844
TU110433 other upstream 1475851 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 1475851 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 2487799 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 2487799 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 2804733 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 3055528 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 3166814 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 3340108 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 4093546 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 4093546 35964571 ~ 35967384 (+) True G89299

Expression Profile