RNA id: AMCG00021845


Basic Information

Item Value
RNA id AMCG00021845
length 1442
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00021845
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 32095525 ~ 32097519 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATATCTCAGATtatgaaagtaaaaaaagtttggcttgcttgttttaaataattgttacaatacCCATGTAGACTCTGTTATGTTTCCGTGGGGAAGAAATTCATAGTAAGAACCGGAAGCACGTTTCTGACGAGGCCATGCTTACATGTTTGAGTTCAGCAGCCCTGGGTTGTCTGGCGTTTATGATTTTAATTCACaatattttaacttaaaataataaataaatacatggtcTTGGTTTATACAGATTCGTAACTTTCGATTTGTCTATAAGTTAAAATGAAGGTCAAACGCCAGAAACAAGCCAAGAAAACCATcagtttttataaatacaacttCAGTTTCCGGGAACCTTTTCAAATCTTGCTCGATGGCACTTTTTGTCAAGCCgcccttaaaaataaaattcaaattaaagagCAGATGCCAAAGTATCTGATGGGAGAGGTACAACTGTGCACAACGAATTGTGTTTTAAAGGAACTCGAGTCCCTTGGGAAGGAGCTTTATGGGGCAAAAATTATCTTGCAAAGGTTTCAGATTCGTAACTGCCAGCATTTCAAGGATCCAATTCCTGCATCGCAGTGTCTCAAGTCCATGCTGGGAGAAAACAACCCTCACCACTACTTCATTGCTACACAGGACCAGGCGCTGACTGCAGCAGTGAAGAAGATTAATGGGGTTCCCCTGCTATTCATCATTCAGAACACCATAGTACTGGATAAGCCCTCTCTCCAGTCAGTGGCTTATGTCCAGGCAATTCAAGCAGGTCAGGTAGTGACAACGCAGGAGCAGAAGAGCATCCAGACCCTGAAAGAGGAGCAAGGCCTGGTGAAAAACATGGAGCGCAAGGGCAAGAAGCGTAAGAGGAAAGGGCCTAACCCCTTGAGCTGTCTGAAGAAAAAGAAGTTGCAGTCACCTTCGGAAAAAACAGCTGATgtcaagaaaaggaaaaggagtcGTCACAGAAAGCACAACGCGACAGGGCTTTTGACTTTGCAAACGGCAGCTCCGTCTGGCACGGATTAACACTGTCTAGTCCGGCAGACGGAGTGTGTCACTCACTTTGTTCTATGTTTCTTACTCTCCACATCCATAAACTCTTAGTTTTCTTATTTCAGAGATTGTAAAGAAActattttttctgtatatatgtcTGTACACATTCATAATCTATGATACATGAAAGGGTTTGTATTGGCTGGATGAGTGAGAACAATTGTTAATTCAGGGTGTTCttcagaaaactaaaatatgtaaatcaacTGAATACTGCAATAAACGTCATTACCATCATGAATACATGTTGATGTTAGCAATTTTTATCATGATGTTGTTTCCCGTAATATTATAAAATTGCGTGAGTTTGTTAAACCATGCTCACATtggataaataataatgaaataaccATAAACCGAAAATTAAACCCATGTGCAACA

Function

GO:

id name namespace
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14773 UTP23; U3 small nucleolar RNA-associated protein 23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110805 lncRNA downstream 586 32094702 ~ 32094939 (-) True G88795
TU110768 lncRNA downstream 106475 31988774 ~ 31989050 (-) True G88762
TU110747 lncRNA downstream 235692 31859409 ~ 31859833 (-) True G88742
TU110741 lncRNA downstream 259286 31798752 ~ 31836239 (-) True G88736
TU110628 lncRNA downstream 1133429 30961703 ~ 30962096 (-) True G88643
TU110848 lncRNA upstream 594752 32692271 ~ 32692496 (-) True G88831
TU110885 lncRNA upstream 1572948 33670467 ~ 33670919 (-) True G88866
TU110890 lncRNA upstream 1662753 33760272 ~ 33760620 (-) True G88871
TU110892 lncRNA upstream 1663723 33761242 ~ 33761474 (-) True G88873
TU110902 lncRNA upstream 1747595 33845114 ~ 33845452 (-) True G88883
AMCG00021849 mRNA downstream 26410 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021846 mRNA downstream 47941 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021847 mRNA downstream 57946 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021848 mRNA downstream 77391 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021828 mRNA downstream 745157 31310586 ~ 31350368 (-) True AMCG00021828
AMCG00021861 mRNA upstream 1909140 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021860 mRNA upstream 2082073 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021864 mRNA upstream 2145346 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021865 mRNA upstream 2154155 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021863 mRNA upstream 2166296 34263815 ~ 34274711 (-) True AMCG00021863
TU110795 other downstream 26061 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 963340 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 1207313 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 1670913 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 2352717 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 2249469 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 2249469 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 3277497 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 3846233 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 4317520 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile