RNA id: TU110795


Basic Information

Item Value
RNA id TU110795
length 4584
RNA type TUCP
GC content 0.37
exon number 3
gene id AMCG00021849
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 32063385 ~ 32069464 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTACAAAACAAGCCAGTAACACAGCACGAAGAGAAGAGCAAAgctgtaaaaatgaaaataaaaaaaataggagCAGATCACTTGTATGGTAGATTCTTTTTAGTAAGACCACATGCGGGCAATGTCTGACAGAAATGAAAAGGCGTGAAAAACAAGCTACACTTTCAATAGAGAGTCAGCGATTTTGGTGGAAGGAAGAGCAGTGGCAGTACTTGGATGGCTGCACCTAACCCAAGGGCTGAGGAAAATCACACAGGGCTTGTTGTATTGTACAACAGAGACCAACTTCTTCCAGTCCCTTGCTCAACTTTTTGACTCCTGTTGCGGGTGGCTTTTGCAGTGTCAAAATGAATGCTGAGACTCAGTATGAAGATACTGTCTCAACAATGGtgttggaaaacattaagaatAAACTGATCAATGCCTTCAGGGGAACCGGAGAGCAGGTTGCAGCCTCCTGTGCTGAGAATGATACTGAGAGATGCATCAGAAAAGACTTCCATGCTAACGAAGAACTCCGCAGAGCTAAAATAGATGGAGCAATAACCTGGTTAAGGTCTGAATTGCTGGAGATGCGCTCTCAAGACAGGCAGCTTGCCAAAACACTACTGGACATAAACAGTGAAATCCAGAGACTACGGAGAGAAAACGAAGCGTCGAGTctggagaagaaagaaaacgtCACAGCTAATCACAGTGGTCTTCAATCATCCTTTCCCTTTTAATCAAGCAAAGGAGAGGCAGTCTCTTGTACAGATTCACGAAGAAGCCAGTTGTTCAGTTGCTGCAGTTAGGTGATCTTTAACTGAATAATGATGAAAAGACTAGTATAATTTACTGCAATGCACCTCAGGAGATCCTCAAACATTTAACGGATGTTCTGctttttgggaaaaaaatgtactgcTGTGTATTTTCTAACTCCAGAAAATAGACTAAAGTTCACTGCCGGGTATGAATGTTTAACATTATCTGTAAGCACTGACTTATCCTAGAAACTCCAACTGAACAATGCATAAAAATGTTGTTAGGGACATAGTGGTTAAtgtactttgaaaatgtaacacatGGAATATATAGCATAGGCTGTCATTCAGTCATTTGGGGAATGTGGGATAACCACATACTGTATATGGTGGGGAATGTaatcagttggattcaggtttTCAGAAACAAAGTCCAAAATTGAGACAAATgtcaaaaaaaacaatttacttGAGCTCACATTTTACACACTGTGAATATATTAATAGAAAACCTGTATTAATAGCATATTGCTTGCTGTGCATTACTTTTGATAAAAAATCCTGCCAACTTTGAAAGTTGGCATTGTATCTGCTTCAAACATTTGCCCTGCCCACTCTGTGTCAATGATACTGAATGTGTAGATTTCTGAGAGTCTTCCAAAGCACATTTCCAAACCTCATGTGATAtttcaggcaaaaaaaaaaaggtattcaAAGGATCCTCAAGCTATACAATCTTTCTTTGGTAAGAAGCTACTTGGAGTTCTACATTTCCTTGAGTTTTACTAGGGGGGGATTAAGATGGAAAGGGGGGGTTGGCTTGCTTCATTACTTTGGTACGATTCCCACTGAAGCCCTGAGGCTAGTATCTAATCTATTGTGCATAAATCCACAGTAACTTTGTTACAGATTTTTTGTGGTGAAAAGAAACTGGTGGGGTTGCCTGTTTGCTCTGAGTGTATGCTATAGGTTGGATGAGCTGGTCTTGAATGCAGCCTATGTCATTGCTAGCCTTGGAAAGGAATTCCCAGATGACACTGCACAATGACTGCTTTGGGGGGGTGTTATTCAGGGgacaatttgtttttggtttgctgAACATGAGAAACCCCGGTGGCTGATCTGGTGCCTGTTTAATTCAGTGTATTATCTGTTCCATTTGCATCAAATCCTTTGAATGGTGTGATAAATGGTACACAttctgtatacatatacatactcTGGGcatgcagtgtgaaaaatagTGGATAACTTTGTGACATTGTGACAATTGGAGGATGCATGCTTTGTCAGATTGCTTTTGAAGCAGTACCAAAGTCACAGCAGTGATGAGCCCAGTCCTATTGTTTGCAATTCCAAGTTGGGgtgaaaaaatggaaaaaaggaatTGGCAATTcaaattttataattataattaagtgATAATGAATGCTACTCACCAATCTTCCATCTACTCTACCAAATGTTAACTGGCATATCATTTGAAATTCCAAATTAATGAGAAACAGTtacaaatgataattaaaactaaattaaaatgtggctTCTGCTGAACCAAACCATCCAATTTGTTAACTTTTCAGGTTGCCTTAAGCATGTATATTGCACAACATTAGGATGCTAGTAGAATCAAGAATCCACTAACATTTTCTCACAGTGCTTTTCCTCTTGGTTCTCAGTattgtgttcaaatgtattttcatatggaaaacaaaatccaaatgcTTGTAAGTGATGcataatggcaaaataaataataaaaccaccTTATCATGCCTCAGGGTCTTAAAAACACATACCATTTCAACATccctttatatatttaagacaTTTGGATTATACATTTAGACCATTCTATTCTTCTCTTACGCCtacattttattcactgtaatgtgtTAcccttgtaatattgtgtaaagGTAGAACATAGTATATTAGTGATTGTTAAACCACGTAAGGCTCTTTGCAttgcaagaagaagaagaagaagaaatgtaCTCAGTTGTTCTTAAGGCAAGACCAGGATATCCTGGATTGTTCTGATACAATGAGAGAACAAAATTTGGATTTGTTGAATGAACACTACATACTTGGACACACATATCTCACTTAACTCTCCTGAATGAATGGTAAGCTTGGTGAGAGACTGTGAGGAAAATAGCTTTTTTAATAATCtaccaaaatataaatatacactctTTCACAACTGACTTTGCACAACTCTTTTCCCCCAAAAGTTGTTCTTTggaatgtaatgttttcacatttccaTATACTGTTAGTAAAGAATATATAcactcaaaattattttaacaattaatGTTTGAgcaataaccccccccccaaaaaaaaacaacaacaacatactaGCTAATACTAATCAGAAGTagcaaataataaacaattgaagTACACTCACATTTACTCAAAGAAAAGTAAGTGTTTAATAGACTTTATTATTTGGTATACTCAAGTACTGCAGTGATGCAGAGAGTAGCTGTTAAAAATCAGTTAGGAATGGCAGAGAACATGTCCACCTGTCAGTTGTCGtggtgttatttttgttaaaaaaaaactcttttaTCCCATTCAAGCAAACGCTTTGCTTATAAATGCTGTCACTTCAgagaaatcatttttttccttttaacatttataaatccaagtctaagaaacaaacaaataagacgTACAAAAAAAGTTACAGTATTGACAATTCTTCTacttcattatttatacattttatttaagaaagagCGGCAGAGGCATTCTGATTTGTCGAGAGATTTACTTTGTGTTGCTCCTTTCATCAAACATACGGCTAAACCTAATTTCAGAGCATGCAGTATTTTAGTTTACAAAAAGGTGGAACACAGGTCAGCATTGACAATTATATCACGCACCTCTTCCATATTtactacagaaaataaaacagaaacataagTCCCCCGTGAGATTTGTTCCATGGAAAGTTGTTAACATTGTTCCGGTTGCTTTAAATAGttgaaaaacacttaaataaatcgtaagaaaaagtatttaatcataaattagacaaaaataaaaagcaaaatatactCTTACAAGTAAGGTACGTTACttgttttcttatatttcttatatttatattaactttACACATGAAACTATGGTAACTGAAAGAATGATATTCACATGGATATTATGTGTTCATGTTTAGGTTTCTAATGAGCAATCTAAGCCACACCTGACTGCAGTATGGACACACTGTACTGACACGCCTGCATTCATGTGTaaccactgtatatatgtatgttcagTATTTCATCTTACCATGTTAAGCAACATGGCGACTTGGAATTGCATACAAAATGGAAGCAGCACATTTGAAAGTTACATACAGCTCTGAACTGCTCTTCTCTTACAGAGCCTTGTCATATTTAAGCAAACAgcctttgaattaaaaacataaatccaaGCACGATATGGTGCCCAAACAAACATGGCGGCATCTTGTAACTTGCCCTTGTACAGAGGCTGATGTGTTGGGGAAAAACAACATTCTGAAGGATGCTGATTGTAATATGACAAGGCTGTGCAATAAAGCTGTTGTTCTTCATCTGAGAGCTGCTAAGGCATAGAACTTCTCCTGCTGGAGGTGCGTCTAGGCGAGTGAAGTGCGGTGCCCACAAAGgctagactggagcacacttcCCCTGAACTGGAGTAGAGGCTGCTGCCCTCTGTGTCGCTCTCAGAGTCCAGCTCAGTGATGTCTGTGCACTCCAGTTTCAGCTCCTGGATTCCAGTGTGAAGATCCATCAACTGCTTAATCAGAAGCTGGTCCTGAGAACGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110768 lncRNA downstream 74335 31988774 ~ 31989050 (-) True G88762
TU110747 lncRNA downstream 203552 31859409 ~ 31859833 (-) True G88742
TU110741 lncRNA downstream 227146 31798752 ~ 31836239 (-) True G88736
TU110628 lncRNA downstream 1101289 30961703 ~ 30962096 (-) True G88643
TU110527 lncRNA downstream 1500585 30525746 ~ 30562800 (-) True G88562
TU110805 lncRNA upstream 25238 32094702 ~ 32094939 (-) True G88795
TU110848 lncRNA upstream 622807 32692271 ~ 32692496 (-) True G88831
TU110885 lncRNA upstream 1601003 33670467 ~ 33670919 (-) True G88866
TU110890 lncRNA upstream 1690808 33760272 ~ 33760620 (-) True G88871
TU110892 lncRNA upstream 1691778 33761242 ~ 33761474 (-) True G88873
AMCG00021846 mRNA downstream 15801 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021847 mRNA downstream 25806 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021848 mRNA downstream 45251 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021828 mRNA downstream 713017 31310586 ~ 31350368 (-) True AMCG00021828
AMCG00021826 mRNA downstream 838004 31221983 ~ 31225381 (-) True AMCG00021826
AMCG00021845 mRNA upstream 26061 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021861 mRNA upstream 1937195 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021860 mRNA upstream 2110128 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021864 mRNA upstream 2173401 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021865 mRNA upstream 2182210 34251674 ~ 34260396 (-) True AMCG00021865
TU110664 other downstream 931200 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 1175173 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 1638773 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 2320577 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 2991625 29069201 ~ 29071760 (-) True G88288
TU111038 other upstream 2277524 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 2277524 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 3305552 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 3874288 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 4345575 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile