RNA id: AMCG00021854


Basic Information

Item Value
RNA id AMCG00021854
length 1647
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00021854
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33435316 ~ 33453653 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTGTGGATCAACTGTTATCAACAATGAAGGCATTCTTCTGTCACCAAACTACCCTTTGAACTATGAAAACAATCATGAATGCATCTACAGCATCCAAGTGCAAGCAGGCAAAGGAATCAACATTTCAGCTAGAACCTTCCATTTAGCACAAGGCGATATTCTGAAGATCTATGATGGGAAAGACAGCACAGTGCATGTGCTTGGAGCATTTACTGGTTCTGCAATGCTTGGACTGACATTAATAAGTACTTCAAATCACCTCTGGTTGGAGTTTTTCTCTGACTCAGAGTCAACAGGCGAGGGATTTAAGCTGGTCTACTCCAGCTTTGAGCTCTCGCATTGTGAAGATCCAGGAGTACCTCAGTTTGGATACAAGATCAGTGACCAGGGCCATTTTGCTGGCAGCACAATTACTTACAGATGCAACCCAGGCTACACACTTCACGGAAGCAGCATCCTCAAATGCATGACTGGAGAGAGAAGGGCATGGGACTACCCTCTTCCCTCTTGTATAGCTGAATGTGGAGGCAGATTCAAAGGGGAATCCTCTGGAAGAATCTTGTCCCCTGGCTATCCCTTTCCTTATGACAACAACTTACGATGCACCTGGATCATAGAGTTTCTTGCATTCGACACTGAGGCATCGCATGATATCTTGAAAGTTTGGGATGGTCCACCTGAGAATGAAATGTCTCTCAAGGAAGTCAGTGGCTCCTTGCTTCCAGAAGGCATTCATAGCACTCTGAATGTGGTGACAATTCAGTTTGAAACAGACTTCTACATCAGCAAATCTGGATTCGCCATTGAATTTTCAAGCTCTGTTGCCACAGCTTGCCGTGACCCTGGAGTGCCTATGAATGGCAGCCGCAATGGAGATGGAAGGGAACCCGGTGATACTGTCACATTTCAGTGTGACCCTGGCTATGAGCTTCAGGGTGAAATGAAAATTACCTGCATTCAGGTGGAAAATAGATACTACTGGCAGCCCAGTCCTCCTGTTTGCATAGctcCATGTGGAGGCAATTTAACAGGATCCTCTGGTTTCATCCTATCACCAAATTTTCCGCATCCATACCCACATAGTAAAGACTGTGACTGGATCATTGCCGTGAACTCAGATTATGTTATTTCCCTTGCATTTATCAGtttCAGCATTGAACCCAACTAtgattttctatatatttatgatgGACCAGACAGCAACAGTCATCTAATTGGTAGCTTTCAAGATAGCAAGCTGCCCGAAAGAATTGAAAGCAGTtcaaatacaatgcatttagCATTTCGAAGTGATGGGTCTGTTAGCTATACTGGTTTTCATCTGGAATATAAAGcTAAACTGCGGGAGTCATGCTTCGACCCTGGTAGCGTAATGAATGGTACAAGACTTGGAAGTGACTACAAACTGGGTTCAACAGTCACATACTACTGTGAGCCAGGTTATGTACTGCAAGGATATTCAACCTTAACATGTATCATGGGAGAAGATGGGAGACCTGGTTGGAACAGAGCTCTGCCAAGTTGCCAAGCCCCCTGTGGGAGTCGCTCAACAGGTACAGAGGGAACAGTCTTGTCCCCCAACTACCCCAGAAATTACACTGCCGGCCACAGCTGTGTGTATGCTATTTCAGTTCCAAGAGAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110855 lncRNA upstream 557644 32877399 ~ 32877672 (+) True G88838
TU110850 lncRNA upstream 629439 32805318 ~ 32805877 (+) True G88833
TU110786 lncRNA upstream 1367909 32065283 ~ 32067407 (+) True G88776
TU110780 lncRNA upstream 1406150 32028958 ~ 32029166 (+) True G88771
TU110767 lncRNA upstream 1446265 31988784 ~ 31989051 (+) True G88761
TU110886 lncRNA downstream 257121 33710774 ~ 33711053 (+) True G88867
TU110891 lncRNA downstream 307590 33761243 ~ 33761474 (+) True G88872
TU110901 lncRNA downstream 391443 33845096 ~ 33845340 (+) True G88882
TU110903 lncRNA downstream 457767 33911420 ~ 33911775 (+) True G88884
TU110906 lncRNA downstream 504942 33958595 ~ 33959180 (+) True G88887
AMCG00021857 mRNA upstream 40091 33382419 ~ 33395225 (+) True AMCG00021857
AMCG00021853 mRNA upstream 135086 32995224 ~ 33300230 (+) True AMCG00021853
AMCG00021852 mRNA upstream 926991 32500223 ~ 32508325 (+) True AMCG00021852
AMCG00021851 mRNA upstream 1001378 32418301 ~ 32433938 (+) True AMCG00021851
AMCG00021844 mRNA upstream 1215843 32193277 ~ 32219473 (+) True AMCG00021844
AMCG00021856 mRNA downstream 21515 33475168 ~ 33537910 (+) True AMCG00021856
AMCG00021855 mRNA downstream 94943 33548596 ~ 33586500 (+) True AMCG00021855
AMCG00021858 mRNA downstream 356821 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021859 mRNA downstream 821013 34274666 ~ 34286319 (+) True AMCG00021859
AMCG00021862 mRNA downstream 851296 34304949 ~ 34323922 (+) True AMCG00021862
TU110433 other upstream 3041095 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 3041095 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 4053043 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 4053043 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 4369977 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 1472900 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 1584186 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 1757480 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 2510918 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 2510918 35964571 ~ 35967384 (+) True G89299

Expression Profile