RNA id: AMCG00021855


Basic Information

Item Value
RNA id AMCG00021855
length 1968
RNA type mRNA
GC content 0.45
exon number 14
gene id AMCG00021855
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33548596 ~ 33586500 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gTGATTCTTCAGGTACCTGTGGAGACCCAGGCATTCCTGCCCACAGCGAAAGAGAAGAGactgattttaaaatcagaagCAAAGTACGGTTCACCTGTGCAACAGGGTACATTCTGTATGGCTCAGCTGAAAGGATGTGTTTCCCCAATGGAACTTGGTCAGGAAGACAGCCATCATGCAAACTGTGGAAATCCAGGGACCCCAACAAATGGCAGAGTATTCCGCATTGATGGGACAACCTTCTCCCACTCAGTCATTTACTCTTGCATGGAAGGATACTTGCTAACTGGCTCATCTGTGAGGCAGTGTTTGGCTAATGGGACATGGTCTGCGAACCCCCCTAATTGCACAATGATTAACTGTGGGGATCCTGGAATTCCAGCTAATGGACTGAGATATGGGGAGGACTTTTCTATTGggcaaaatattacatttgtctgTCAGCCTGGATATATCATGGAGCCAATAAGTTCCACCATTCGTACCTGCACAAAAAATGGCACGTGGAGTGGCATCATGCCAGCTTGTAAAGCCGTTACCTGCCCTGCTCCACCAGCAATATCCAATGGAATACTGGAAGGAACAGATTTTGAGTGGGGGACCAGTGTCAGCTATAGCTGTTCTTCAGGATATGAGCTTTCTTTTCCAGCAATTTTAACCTGTGTTGGAAATGGAACATGGAGCGGAGAGGTGCCTCAATGTTTGCCCAAATTTTGTGGGGATCCAGGAGTCCCAGCTGAAGGCATGAGAGAGGGAAGGAGTTTCATTTACCAGTCCGAGGTCTCCTTCAGCTGCAATCCTCCATTTATTCCAGTGGGTTCCACCACCAGAATTTGCCAGGCTGATGGAACATGGAGTGGATATCAGCCTCGCTGCATAGAACCCACTCGCACCACATGTGAAAACCCTGGCACTCCACGGTACGGTTCACTGAACAGAACATCTGGTTTTAAGaTTGGGAGTGTGGTGGAGTTTCAGTGTCAGTCCGGCCATCTTCTTCAGGGCTCAACCACAAGAGTGTGCAGGCCAGATCTCACATGGAGCGGAGTGCAGACAGAATGCATCCCTCACACCTGTAAACAGCCAGAAAGTCCCCCTCATGCAAATGTGGTTGGAATGGATCTGCCTTCACTGGGATATACGTTGCTTTACAGTTGTCAGCCAGGCTTTTTTCTATCTGGAGGATCAGAGCACAGAGTTTGCAAGTCGGATGGGACATGGACTGGCAAAATGCCAATATGTCGAGcTGGTTCAAAATTATCAGAGAAAACCATTAAGCCTGTGCCAGGGACACCGAGTCCTAAACTTCatgttcCTGATGATGTATTTGCTCCCAATTACATCTGGAAAGGTTCCTATAACTACAAGGGAAAGAAGCAACCAATGAATTTAACTATAACAAGCTTTAACACAACAACGGGTAGAGTTAATGTAACGTTAACCGACAGTAACATGGAACTGCTGCTTTCAGGAGTTTATAAAAGCCAAGAAGCAAGGTTGATGCTGCTTATGTACCATGCAAAAGCATCATCTTATACTTCTCTGAGCAAGATTAAAGAAGAAACGTGGTCCATGGATGGTTTtGTTTCAGCAGAACCTGATGGTGCAACTTACGTCTTTCAAGGATTTATACAGGGTAAAGACTATGGCCAATTTGGACTACAAAGATtagGTCTAAACTTGTCAGAGAGTAATAACTCTTCAAATCAGCCCCATGGTACAAATAGTAGCTCTGTGGCCATAGCAATCCTTGTGCCTTTTTTTGCCCTGATATTTGCAGGATTTGGATTTTACTTATACAAACAGCGGACTACGCCTAAAACACAGTACACTGGCTGCTCAGTACATGAGAACAATAACGGCCAAGCAGCTTTTGAAAATCCAATGTATGACACCAATGCAAAAGCTGTGGAAGGAAAAGCTGTTCGATTTGACCCTAACCTTAACACAGTCTGCACAATGGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110855 lncRNA upstream 670924 32877399 ~ 32877672 (+) True G88838
TU110850 lncRNA upstream 742719 32805318 ~ 32805877 (+) True G88833
TU110786 lncRNA upstream 1481189 32065283 ~ 32067407 (+) True G88776
TU110780 lncRNA upstream 1519430 32028958 ~ 32029166 (+) True G88771
TU110767 lncRNA upstream 1559545 31988784 ~ 31989051 (+) True G88761
TU110886 lncRNA downstream 124274 33710774 ~ 33711053 (+) True G88867
TU110891 lncRNA downstream 174743 33761243 ~ 33761474 (+) True G88872
TU110901 lncRNA downstream 258596 33845096 ~ 33845340 (+) True G88882
TU110903 lncRNA downstream 324920 33911420 ~ 33911775 (+) True G88884
TU110906 lncRNA downstream 372095 33958595 ~ 33959180 (+) True G88887
AMCG00021856 mRNA upstream 10686 33475168 ~ 33537910 (+) True AMCG00021856
AMCG00021854 mRNA upstream 94943 33435316 ~ 33453653 (+) True AMCG00021854
AMCG00021857 mRNA upstream 153371 33382419 ~ 33395225 (+) True AMCG00021857
AMCG00021853 mRNA upstream 248366 32995224 ~ 33300230 (+) True AMCG00021853
AMCG00021852 mRNA upstream 1040271 32500223 ~ 32508325 (+) True AMCG00021852
AMCG00021858 mRNA downstream 223974 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021859 mRNA downstream 688166 34274666 ~ 34286319 (+) True AMCG00021859
AMCG00021862 mRNA downstream 718449 34304949 ~ 34323922 (+) True AMCG00021862
AMCG00021869 mRNA downstream 820349 34406849 ~ 34413209 (+) True AMCG00021869
AMCG00021876 mRNA downstream 1010416 34596916 ~ 34607621 (+) True AMCG00021876
TU110433 other upstream 3154375 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 3154375 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 4166323 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 4166323 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 4483257 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 1340053 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 1451339 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 1624633 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 2378071 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 2378071 35964571 ~ 35967384 (+) True G89299

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029612 False 11013 mRNA 0.53 67 NC_007130.7 44123618 ~ 44801918 (-)