RNA id: AMCG00021857


Basic Information

Item Value
RNA id AMCG00021857
length 1104
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00021857
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33382419 ~ 33395225 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGATAAGGAAAGTTGTGGGGACCCAGGGACACCTTTATATGGCATCCGGGAAGGCAGCGGATTCTCCAATGGCGATGTACTGCGATTCGAGTGCCAGTTTGGGTTTGAACTTATTGGAGAAAGATCCATCTCTTGTCAGAACAACAACCAGTGGTCTGCAAACATACCAATCTGCATATATTGCAAgattCCTTGTTTATCTAATTTCACTGCACCCATGGGGACTGTACTTTCCCCGGATTACCCAGAGGGCTATGGGAACAACATGAATTGTGTCTGGCTTATCATCTCCGAACCAGGGAGCAGAATTCACCTGGCCTTTAATGACTTTGACTTGGAGGCACCATATGACTTTCTCACTGTGAAAGATGGAGAACAACCAGACTCAACTGTTCTGGGTAGATTTACTGGGGCAGAAGTCCCATCCCACCTCACAActTTTGGACACAATGAATGCCCTGATCCCGGGATACCTATAAATGCTCGTCGATTTGGTGACAATTTCCAGTTAGGTAGCTCCATTTCTGTCATTTGTGAAGAGGGATTTATCAAAACCCAAGGAACAGAAACCATCACTTGTGAATTGGATAATGGAAAGGTAATGTGGAGTGGACCCATTCCAAAATGTGAAGCACCTTGTGGTGGGCATTTCTCTGCTCCCAGTGGAGTGATACTGTCTCCAGGCTGGCCTGGATATTATAAAGACTCTCTCAACTGCGAGTGGGTGATTGAAGCAGAAATGGGACGctccattaaaattacatttgacagATTTCAGACTGAGCTAAATTATGACTTTTTAGAAATTCATGATGGGCCTAATCTCCTTTCCCCACTTATCGGCTCTTACAACGGAACTCAAGTCCCTCAGTTTCTGTTTAGCAGCAGCAATCATCTGTATCTACTCTTCACCACAGATAACAGTCGTTCGAATAGTGGTTTTAAGATCTTCTATGAAAGTGTTACAGTTGATACGTATTCGTGCTTGGATCCAGGAATACCAGTCAATGGACTTAGATATGGACAGGACTTCTCCATTGGATCAACTGTGTCCTTTGGTTGTGATCCAGGTTACAGACTAAACCATGAAGAGCCTCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110855 lncRNA upstream 504747 32877399 ~ 32877672 (+) True G88838
TU110850 lncRNA upstream 576542 32805318 ~ 32805877 (+) True G88833
TU110786 lncRNA upstream 1315012 32065283 ~ 32067407 (+) True G88776
TU110780 lncRNA upstream 1353253 32028958 ~ 32029166 (+) True G88771
TU110767 lncRNA upstream 1393368 31988784 ~ 31989051 (+) True G88761
TU110886 lncRNA downstream 315549 33710774 ~ 33711053 (+) True G88867
TU110891 lncRNA downstream 366018 33761243 ~ 33761474 (+) True G88872
TU110901 lncRNA downstream 449871 33845096 ~ 33845340 (+) True G88882
TU110903 lncRNA downstream 516195 33911420 ~ 33911775 (+) True G88884
TU110906 lncRNA downstream 563370 33958595 ~ 33959180 (+) True G88887
AMCG00021853 mRNA upstream 82189 32995224 ~ 33300230 (+) True AMCG00021853
AMCG00021852 mRNA upstream 874094 32500223 ~ 32508325 (+) True AMCG00021852
AMCG00021851 mRNA upstream 948481 32418301 ~ 32433938 (+) True AMCG00021851
AMCG00021844 mRNA upstream 1162946 32193277 ~ 32219473 (+) True AMCG00021844
AMCG00021850 mRNA upstream 1236393 32138572 ~ 32146026 (+) True AMCG00021850
AMCG00021854 mRNA downstream 40091 33435316 ~ 33453653 (+) True AMCG00021854
AMCG00021856 mRNA downstream 79943 33475168 ~ 33537910 (+) True AMCG00021856
AMCG00021855 mRNA downstream 153371 33548596 ~ 33586500 (+) True AMCG00021855
AMCG00021858 mRNA downstream 415249 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021859 mRNA downstream 879441 34274666 ~ 34286319 (+) True AMCG00021859
TU110433 other upstream 2988198 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 2988198 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 4000146 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 4000146 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 4317080 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 1531328 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 1642614 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 1815908 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 2569346 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 2569346 35964571 ~ 35967384 (+) True G89299

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU261168 True 1014 lncRNA 0.52 6 CI01000054 657681 ~ 670511 (-)