RNA id: AMCG00021859


Basic Information

Item Value
RNA id AMCG00021859
length 3220
RNA type mRNA
GC content 0.38
exon number 17
gene id AMCG00021859
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34274666 ~ 34286319 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACCCGGAACAGCAGTATTTTCGAGTCCCATGCTTAGCTCTAGCGACTGGCAACAGAAGGTAAAGACTgacttatacaattaaataaattaatgatttgtTACAATTCAATTCCTAACCGATTGATCGGCTGCGTACAATAATTACGTAAATAAACGAAATATGGGTCCTTAATTCTACAAACAAAAATCACCGGACCTTGTTTTAGCTGTAGCTGTCTTTGCAACGAGCTACACTGGTTTTGACATTCACGTTTTATATATGTTCCCTGCATGTTattccaaaaacaaaagcatgtttcAAAAGACGTCTTTTACTACCCTGATCATCGGGGTGTTCATAGTTTATGTATTGCACACTTGCTGGGTGATGTATGGAATCGTTTACACCAAACCTTGTGAAAAAATCAAAGGCGAAACCTGTATTACGTCTTACCTAAATGAGAAACCCCGACTACAGCTCAGCATTTACACATCTTTGAAGCATACTGGCGATGGCAGTCAAAACCTCATCCTGAGCATTGAAGACTTTGACATACATTCTAAGTTTGAGAGgAAAGTAAATGTTTCCATTCCAAAGAAGACCAGAAACAATGGAACCCTGTACACATTTGTGTTCATCCACCAGGCTGGGGTGTCTCCTTGGCATGACAGCAAGCAGGTCCACCACATTGCCCAACTGACCACTTACATGGTGCCTAAACCCCAGGAGGTTAACCTCATAACAGGGGAGGACACCTCACAGCACTCAGAGCcacagaagaaaacaagcaaTATGCCAGATAGGCCAATCACTCATTGGAGGTCTCGGCTCACTCTTAACATCATGTCAGATGGATTTGACTTTGACAAAGAAGCTCTTCCTAGTGATGTACATCGATACATGAGAGTGATTCAGTATGGGAAGAAAATGCTGTATCTTCCCATATTATTCATTGATGAACTGAGTAATCGAGTAAAGGATTTAATGGTCATAAACAGTTCGACAGCTGAACTTCCTCTCACAATTTCATATGATAAAATTTCACTGGGGAAACTCAGATTCTGGATTCATATGCAGGATGCTGTTTACTCCTTACAGCAGTTTGGTTTCACAGAAAAGGATGCAGATGAGATTAAAGGAATATTTGTGGACACCAACTTGTATTTCTTAGCCTTGACCTTTTTTGTGGCAGCCTTCCATCTCCTGTTTGACTTCCTtgcctttaaaaatgaaatcagcTTTTGGAAGCAGAAGAAGAGCATGGTTGGGATGTCAAGTAAAGCAGtATTATGGAGATGTTTTAGCACCATTGTCATTTTCCTATACTTGCTGGATGAACAAACAAGTTTGTTAGTCCTTATACCAGCTGGGATTGGCTCTTTGATTGAGGTCTGGAAAGTGAAGAAGGCTTTTAAGATTCAAGTTATATGGAAAGGCTTAAAACCCACATTCCagCTTGGAAAATCTGATGAATCAGAGAGAAGAACTGAGGAATATGACACTCAGGCAATGAAATATCTGTCCTATTTACTCTATCCTTTGTGTATTGGAGGGGCTGTTTACTCTTTGCTTTATGTTAAATACAAAAGTTGGTATTCCTGGCTGATCAACAGTCTTGTCAATGgagTTTATGCATTTGGATTCCTGTTCATGCTACCTCAACTTTTTctaAAATCAGTGGCTCATTTGCCATGGAAGGCATTTATGTACAAAGCGTTCAACACATTCATTGATGATGTATTTGCGTTTATTATTACTATGCCAACATCCCATCGGCTTGCCTGCTTCAGAGATGATGTAGTGTTCCTTATCTACCTTTATCAAAGATGGCTTTACCCTGTGGATAAACGAAGAGTCAATGAGTATGGAGTATCGTATGATGAGGAGCCTAAAGGAAAGTCACATAAAGACTAAACACACCTGACAGTGGGGTTGAGGCCTCTTGGCTTCCACACTACAGAGGTGTACGCAATGGTAGaaaatgtttctaaaacaaAAGTGCACCGCAACTACTGCAGTGTTGCTGACCTGTCCAACAATGTGCCTAATGGGAAAGATAGGGCTGCCACCATTAGTGCATGGGTTTCACTAACTGCTGGCCAATATTGACTCAGGAGGGGCCAACAATAGCCATCGCCTGTAGAGAAGCATGAAGCCAATCCTGCCTGCTCTTCTCCCCTAGCATGAGGCGATTTAGACAAGCTTTTTAAAGACCATTCAGGgatattgaattgaatattgaatagctttgctaaaaaacacaaaagtaattATAGCAGTAGGTGCAGcacaaatagaaacatattctactcatttttttcttctcactatagtatttaaaatttgaaagGGTAGTGCCAAAATGATTGACAAGAAAAAGTACATAAGGTTCAAGATGTATATGTattctattaatatttttttggacacattaatacatattgtttcagTACTCATCAATGCCAATCCTGAACTACTGAGATACAGTAACCATTACTTTATCATAATATGGGTTATGCTTGAGGATGAGAAAATGGCATAAATATAATCTGAGTCAATGTCCGGGAATAGACTGTATAATGGGCCTGTATTCAGGAATTCCAAGGTGTGTTTCGGTTTATAATTCATGTCAATTTTATGTTGGTAAATGAATGCcggcaaaatgtattttctttcatgtttttttttcttgatcaTCAATAACAAGTGcttgttaaaatgaattaaaattgGGATCATTGTCTTCTGAAATCATGTATTGTAACTGCTCTACATTCCAAGCAGCGTTTTAATAAGTTTAAGaacttgcatgtttttgtttcctttcattctATGTGTAACCATTAAGGTTTACTTGCAGCAGAACTCTCAGTTTAGTGCAATACAGTAAACTCGTAAGACAAAGAATTGtactacttctaataatatTGCATATCCAAAGCCTGCTTGAGATgtggaaatacaaattaattgtaCTACTCTCCTAAGAAAGTACCACTTACTTTTCTTTGTCAAAAACTAatattgaacaaaatgtaaatatttagatGCAAAGTTTCATTTCGCTGTCTTCTTAACAATGTGCATCAAATGTTAGAATGATTCTTGTATTCCGGACAGCATCTGTTGATGTCATCGAATAATGTCTGCCATGCTCGgctgtatttttaaaggttATAAGATTAAATGTCACCTCTTAAATACAGCAAATTTCATTAAACCAAGACTGTTCATCTA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110960 lncRNA upstream 97188 34176954 ~ 34177478 (+) True G88938
TU110959 lncRNA upstream 97960 34176389 ~ 34176706 (+) True G88937
TU110949 lncRNA upstream 118700 34155421 ~ 34155966 (+) True G88927
TU110906 lncRNA upstream 315486 33958595 ~ 33959180 (+) True G88887
TU110903 lncRNA upstream 362891 33911420 ~ 33911775 (+) True G88884
TU111008 lncRNA downstream 83651 34369970 ~ 34372180 (+) True G88980
TU111009 lncRNA downstream 83651 34369970 ~ 34373665 (+) False G88980
TU111010 lncRNA downstream 97640 34383959 ~ 34386202 (+) True G88981
TU111044 lncRNA downstream 100935 34387254 ~ 34387672 (+) True G89006
TU111048 lncRNA downstream 133472 34419791 ~ 34420057 (+) True G89010
AMCG00021858 mRNA upstream 452580 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021855 mRNA upstream 688166 33548596 ~ 33586500 (+) True AMCG00021855
AMCG00021856 mRNA upstream 736756 33475168 ~ 33537910 (+) True AMCG00021856
AMCG00021854 mRNA upstream 821013 33435316 ~ 33453653 (+) True AMCG00021854
AMCG00021857 mRNA upstream 879441 33382419 ~ 33395225 (+) True AMCG00021857
AMCG00021862 mRNA downstream 18630 34304949 ~ 34323922 (+) True AMCG00021862
AMCG00021869 mRNA downstream 120530 34406849 ~ 34413209 (+) True AMCG00021869
AMCG00021876 mRNA downstream 310597 34596916 ~ 34607621 (+) True AMCG00021876
AMCG00021873 mRNA downstream 338729 34625048 ~ 34678756 (+) True AMCG00021873
AMCG00021875 mRNA downstream 398696 34685015 ~ 34690667 (+) True AMCG00021875
TU110433 other upstream 3880445 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 3880445 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 4892393 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 4892393 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 5209327 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 640234 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 751520 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 924814 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 1678252 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 1678252 35964571 ~ 35967384 (+) True G89299

Expression Profile