RNA id: AMCG00021860


Basic Information

Item Value
RNA id AMCG00021860
length 2923
RNA type mRNA
GC content 0.36
exon number 4
gene id AMCG00021860
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34179592 ~ 34189526 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gatattgGCACAAGAGATCAAAACAGCAGATGATAAAGATTTGTATCTTGATGATGTTATGTCAGGAGATTATCCAGTAGATGACGACGATTTTAATTCGGGATCAGGCTCGGGAACAGGAGAATTGCCGGATGAGTCCAtcactgtgaaaacactgtACAATGTTCCAAAATCAGAACCAACCAGAGACTCGACTAAAGACTTCACACCGAAAGTTGAGACGTCAACATCCAGAATTATCCCCAGAAAGCCTGCCAGGACAGAGCCAACAGATATTTTCCCTGTTGATGGAGGGAATACAAATGATGTGACCAGCACTACCAGCGGACCTCCAGATAAATCTAAAAATGATGCAAATAAAGATGTATCAACAGAGATACGTTCAGAAAACCTCTTCCAGAGAACAGAAGTATTGGCAGctgtaattgctggtGGAGTAATTGGATTTCTATTTGCAATTTTCCTGATTTTGCTGCTGGTGTACCGCATGAGAAAGAAGGATGAGGGCAGCTATGACCTTGGGGAGCGCAAACCATCCAGTGCTGCCTATCAGAAAGCACCAACAAAGGAGTTTTATGCATAAACCTTTAAGAGAATCTCTGACTGAGATCAATGaactttttaaagaaatcaatttaaaaaataataaaaataaataaataaaaagcttttgcaTAGAGTAATGAagaccttttgtttttctttctttaaaggaAAGCCAACCAGGCTATTTTATGATAAATCCCAATTTACTTAAACATTTTCATGCATTCTTTGAAAAGgctgaaagacaaaaacacttcATTTGTAAAGGTGAGATACAAAATGGCATCCTTCAAAGAAGCCATTTAAATCACTGACTACTTTGTAACTGCAGCAGAacttatttgtaaaaaaaaaaaaagtataattaaaaagTGGAAATGAATATAATTGTTCTTTATCTATCCTATTCTTTTACTTTTGTCATAGCATGTCTGAGATTGATCTTACAAgatgtatttcattaatttatctgttttcaaatgttaaaattgCCTTTCTATAGTTTTCATGGTGCAAGTTTGTCTTCATATTAATTCAGATAAcgataaatgtaaattaatttttttccttcaggttacaatgttaattttttttttctttcatataaaGCTAGAAAGATGAagatttcacttttttgttttttgttttcctctcaaTGTAGCTTCAGACTATTGCGAAAGCAGCATCTTTGTACAAAGAAATTGGTCTTGAAGGTTGAAATTgcagatgaaaagaaaagttaaattgACATTACTCACATTTGtgttctctcctcctccttgcGTTTGACCTGCTCCATGTTTCAGAATGTCtcagtgttttctatttttaaatgtagaatatGCAGAGAAGCATAATATCTTGCATTTATATTGTGCTTTAAATCCTGAAGGATctcaaagtattttacaatgaTCAGTTGACAGTCTTCATCCACCACTGAAATAATGTGATGCCCAGCATCCATTCTTGCACCAGAAACTCACCACACTGTAGATAAAATTGAGAAGTGAGTTATTTAGCACATTAAACAATGGGGTTGATCTTTGTTTGGTAGTCCAGATTGAGAAAGCATGAACTGGAATTTAGCTACAGAATTCGTGACCCTGAGTTTAGCAACCCTTCTTTCAAAACGTGCCATGGACTCTTTTCTGGCCACGGGGCATCAGAGACTTTGGTGTAACATCACATATCAATGAAGGACGTTTGCTGTGGCTTTTGGTCCTGGTATGGTTGGTCCATAGGCATGATTCTATTAATTTCAGGGACAACATCTCTGAGAAGTGTAATACCTTTTTAGAAGTCAGGGATGTAATCTAAAAAATACGGTATGCCAGTCGCTGAAGtaaacagctttgtgtttttgtcttctggATAGTATGTTAGTTTCACTTTCTGTAAATATGGACACTAGAActtttgtatatgttttctgCTATTTTGTTCTTTACTatttctgaatcattcagaCCTCGAGAACCTGATAGGGTATTGTTTCAATATCCCTCGAGACACCCTTTGATGACGTGTATTTTCCTACAGATCTGTTTGTGGAGACCTGCATTCAGGCCTCTGTGTCTGATCAAATAAAGTTCAACATGCCTATCTTGATTCTTCCCTTTAAATCTAAGGCAGCCTTAGGAGTATTATCATTACAGATTCTGCATGGTTGTGAACTTGATCTTGGTAAAGATCAGACTTGGTACACTTAGTCATTGATATGAACTTTTCTCATGAAATCAATCTATTCTATCTTGTAACAAGGTTGAAAGAACCAGTAAATCCACTGTGGCTGGCAAAGCGCTTATTGAAAGCATAAATATGTGAATCATCTGATATGGACCTTCAGAAAGTGAGCAAGCAAGGTGGAGCATGAAAACGATCACATTGAGTATTGCGAATGTACTTTTGAAACCCTGTAATTTCTGCCCTTAACTGCAAACAGTATAGTTGTCCTTACTACACTAACCTTCTCACCAGAAGGTCCGATGGAAGCTACTGACATGCCTAAGCAAACCCAAAGACTTTTTAACAGTATTCTCGAAGTTGCTGCAGATTCCTATGGccacgttttttgttttgtttcttttttttttctttagggACCTGACCATTTTGAATCCAACTGCTTAATAGTtatgtagaaatatatattcacaaatgttttaagCCTTTGAAGTGCCTACCATTCTGAATTGTGCTTGTTCCTGTCTGGATTGAAAGATTTCTGTATTACAGGTGTGAGATAATTGCTGGTATTTTATAAGCACAGGCAACTGTAATGGTACCTTTTTTTAGTCTTACAGAAGCAGACAGTATTGTATCTATAATTTGAAACACACTACTGAATAAACATTGTGGCCTAATATTGAAATAA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0048565 digestive tract development biological_process
GO:0060973 cell migration involved in heart development biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0031012 extracellular matrix cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K16336 SDC2, CD362; syndecan 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110961 lncRNA downstream 2111 34177047 ~ 34177481 (-) True G88939
TU110940 lncRNA downstream 198764 33976080 ~ 33980828 (-) True G88918
TU110902 lncRNA downstream 334140 33845114 ~ 33845452 (-) True G88883
TU110892 lncRNA downstream 418118 33761242 ~ 33761474 (-) True G88873
TU110890 lncRNA downstream 418972 33760272 ~ 33760620 (-) True G88871
TU111017 lncRNA upstream 70478 34260004 ~ 34353710 (-) False AMCG00021867
TU111025 lncRNA upstream 94858 34284384 ~ 34286302 (-) True G88991
TU111037 lncRNA upstream 155109 34344635 ~ 34345989 (-) True G89003
TU111045 lncRNA upstream 197728 34387254 ~ 34388010 (-) False AMCG00021868
TU111049 lncRNA upstream 230234 34419760 ~ 34420279 (-) True G89011
AMCG00021861 mRNA downstream 164702 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021845 mRNA downstream 2082073 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021849 mRNA downstream 2110477 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021846 mRNA downstream 2132008 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021847 mRNA downstream 2142013 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021864 mRNA upstream 53339 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021865 mRNA upstream 62148 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021863 mRNA upstream 74289 34263815 ~ 34274711 (-) True AMCG00021863
AMCG00021866 mRNA upstream 137632 34327158 ~ 34348033 (-) True AMCG00021866
AMCG00021867 mRNA upstream 158516 34348042 ~ 34356907 (-) True AMCG00021867
TU110795 other downstream 2110128 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3047407 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3291380 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3754980 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4436784 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 157462 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 157462 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 1185490 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1754226 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2225513 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_09788926_09791625.mRNA True 777 mRNA 0.44 3 CI01000016 9788926 ~ 9791923 (+)
rainbow trout (Oncorhynchus mykiss) TU2658802 True 1676 lncRNA 0.42 2 NC_050572.1 36606460 ~ 36636846 (-)
eurasian perch (Perca fluviatilis) TU182829 True 1376 lncRNA 0.44 3 NC_053124.1 23874216 ~ 23911610 (+)