RNA id: AMCG00021862


Basic Information

Item Value
RNA id AMCG00021862
length 4137
RNA type mRNA
GC content 0.42
exon number 14
gene id AMCG00021862
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34304949 ~ 34323922 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

catgcatgcgtgtAGTGATTAACAGTGTGTGGTAGAGGGTGTTCACAACGAATGTACTTTTTTGTAGCATCATGTCTATTACACAGCATCAAGATTTTGAGCAAGTATTGGGGATATTGAGATCTCTGTATTCACATGTGCAGACGCTACAGGAGTACATTGCCAGTGTTCGTTTTGTAGAAGGCAATAGGCAACCCTTGGTGTCTAAAACAGACGGCGACAAATACAAGAAGTTCATTGCAAACATCATTGTCTGCAGGTCAGCCGACAGTAAACCTTTGGTTCAACCTGCCAGTTTTGAACAGCTTAGTACCCTAAAAGATCAGGTCACCTACACACTGAAGAACATCTGTGATAAAAGGAAGAGGAATGTGTTGGCCCATGGACTTGCCAGTGTTGGAGAAAGCAGTGCGTCCAGCTTGTCATACCAGCTAGGCCACAGCACCTCTGCAGTCAGCAGCAGCCCCCTGTGGAACATGTTACTGAGACGACTGGGCACTGCTGTGATGAAGCATCTTTTGGAATGCTGTGCGCTCTTCACTGCGGTGCCCCCCTCCTGCATGTTTCAAGTTTCTGGGGTTCCTGTGTATGATGCATTCTCCCCTGGGACTCATTACTCATTTAAATGTGCCAGGTTGAGGTCACCACAAAGCAGATCTAATATTCTTTTGATGCTGgctaaaacaaaattgaatttcTACAAAAAGCATAAGAAGAAGTCAAGACAAGGGCCAAGGAGAAGTCTGAAAAGTAGGGCATCTAAACGTACCAGTAAAAGTGACCTCGGAAGCCCCCCAGCCAAAAAGTTTAAGATGGATCCTGAGCTTGCTACTGTGGAGACTAAAACAACACCTCCAAAAGCCCCAAAACACGCAGCTTCccctttgtctgttttattcaaaATGCACTGCATGTTGTACTCTGGCCGACGTGTCAAGTCTTTAATTTTTACCAAAGGACAGAAGAAACAATGGAATGGGTTGGAAACTGAGACGCAGACCAGCTTAACTGCAGAGGGCCTTGTGAAAGACATATTTTTGCAGGGAGAGAGCTTTGGCAAAAAGAGTTTACCGAAACGCTTCCGCAACATGCTTGGCATCTTCGCTCAGTTACTAACGAAACATAAGAAGTGTAGCTATGTTCGGCTGCTGAGGAAGAATTGCTCCGATGGCTTTCGACGGGTTCCTGAACACCGAGCAAGCTCGGACTCAAGCGACCAGGAACGTGACTTTAATGCGCTTCTCAGGCAGTATAGCAGCCCCTTCCAGGTGTATATGTTTGTTAGGGAGTGCTTACATGTTGTCTTCCCACACGAACTGTGGGGTTCTAACCACAATCGAAGCCGCTTCCTCGTGAACTTGAAGAAGTTTCTACTCATGGGGAAGTTTGACACGTTGACGCTGTTGGAAGTTTTGTGGAAGATGAGGGTTAATGATTGCGACTggctaaaattaaacaaaaatgCTTCTTGCCCTGCCATTGAACACCGAAGCCGTGAGAGGATATTGGGACAGTTTTTATCCTGGGTTTTGGAGTCCTATGTGGTTGGGTTATTGAAGTCCTTTTTTTTTGCCACGGAGAGTGCTGGACAAAAAAATGCCCTCAGATTCTACAAGACCTGGGTGTGGAGAAGACTGCAGAGCATTGCCTTTGGcaaATACTTGTTGAAAGGAAAATTTGAGCTTGTAAGCCCAGAGGAACTCAGAAAGCACAAAACTCCAGTGCTGAAAGTACGTTTCATCCCAAAGCCAGATGGAATGCGGCCTATTGTTAAAATGGGTAGAACGAGGGACTCGATCAGTGAGCAGAGCAGATGGAAAAAGGTTGATGTAGCCAGTGCTTTTGACAATCTCCCACATGACAAACTGTTGGACATAGTGTCTGACATTTTATCTCCTGTAATGGATGAGGAGTACAGCATCAGGCGGTATGCCCAGATCTGGCCTGACACCAATGAAGGGCTGAGAAAATCATTCAAAAGACATgcCACAACGTTGGGCGAATTGTTGCCAAACATGAGGTCATTTACAGCTGCACAGCAAGAAGAAACCAATTTGCGGAATGCAATACTGGTTGAACAGGGCCTTTCAACTGATGTATTTGGTTGCAATCTGCTTAAATTCTTCAAGGAGATGCTTGAGAACAGTGTACTTCAGATTGGGAAAAAGTGTATGTTGAGATTGATAGATGACTTTTTGCTCATCACTCCACACCTATCCAAAGCACAGACCTTTCTCAGAATACTTGCAGCAGGGGTACCGGAGTATGGCTGCTTCATTAACCCTCACAAGACTGTAATCAACTTCCCCATTGATGACATTCCAAACTGCTCTGGGGTCAAACAGTTGCCACCAGCATGCCTGTTTCCTTGGTGTGGCCTTCTAATGGACACTAGTTCACTTGACATCTACTATGACTACAGAAGttATGCTGGAGTATCCATTCGCTACAGCCTGACCCTCGGTTCCACGTCTCATCCTGGGCAGCACATGAAGAAGAAACTCATGTCtattctgaaactgaaatgcCACGCTATTTACCTTGATCTGAAGATCAATAGTGTGAAGGCTGTGTACCTCAACATTTACAAGATATTCCTGATTCAAGCCTACAGGTTCCACGCCTGTGTAATAAACTTACCATTCGGCCAGAAGGTCTGCGATAATCCCAGCTTCTTTCTAACAATGATTTCTGCAATGGCAATTTATGGCTTCTCAGCTGTGAGGCTGATAAACAAAGAAATCCCCCATGGGTTTAAAGATACCTCTGGCCCTCTGCCTTATGAAGCTGTGCAGCTGCTGTGCTACTGTGCATTCCTTGTGAAATTATCTAGGCACAGATGCGTGTATAAATGCCTTCTTGGAAGCCTCAACACATGTAAGCGACGACTGGACAGGAAGCTCAGAAAGGAGACATTGCATCTTATCAGACAGGTCACTGATCCCCCTGTGCCTCCAGACTTCACCCTCATTATAGTTTAAGATCATTATGTTAACTCTAGTAAACCACTTGAAATAACTAGTACTGTAAACCTGCATGTATTCCTGCTGAATTATAGAGGTGCTCCgttccctgctaacacacaatgttgccacaacgttgtagcagcgttgtgtgttagctgggttatcTTCTGAAAAAGTGGAATCTTCAAACTTGGGATAGTCATTGAAAATTTAAATCCTTAAATATCCAGGGAAAAACatggaaatcaataaataaataaataaataaatattgtggcTATTGTATACCAACATTGCAGTGATGATAAGGCTTAATGTCAATATTTACCTTAGACAGCTGATCAAAATTGTTGGTAAATGAATGGTTGTGAAAAGGGGGAAAgggtctgtttgttttgaggGGTTGTGTCtatgtgtattattatagcAAACGGGTGAAATACAGATCTAATTTGAACTGTGAAAGGGTATTCCATGATACTTCAGGTCTTTAAGGAAAACATGATAGTTACATAATGCATCACCAGAGTAATTGTATCACAAACCTTGTATAGTtgactgcaaatcatgacattatcttgattttctttttttctttttttaatggacacaGCATTATACTGTACATTGTTACTGCATCAAGGCAGTTATGCTTCGATTTGGcacataaatgtatttcttggaAAAATAGTGATACAAATGTCTATTttcttattagtattaaaatatttgtatttgttaaggTTTATTGTGGCTAGTAAATCCAGTTTTAATGCTTAATAAATCTGGAAAATCTGGATGTGGATATGGAAAATCTGACTTGAAGGCCTAAAATAGCTGAAAACGACTTTGAATACAGCCAATGAGCCCTTCTTATGACTAAATAACTAAGTGTCAAAGTCTAGTACCACAAATATCttgggggaaagaaaatgtatttccctgGAGATCTGACTGATCCATTTTTCGTTTGAGTGTAGTATTTCAATATTCTTGTTCCTCTGTTCTATTTAcatgttgtatttgtgtttgtattttgtctattttttgtttattaaattgtaaattgtcttTCAAGTCCTTCAATCCCAGTTTCTCCTTGACCCATCATGGCTGTAAATTGAAAAAATTgttgagatttatttatttatttatttattttatacaaaag

Function

GO: NA

KEGG:

id description
K11126 TERT, EST2; telomerase reverse transcriptase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110960 lncRNA upstream 127471 34176954 ~ 34177478 (+) True G88938
TU110959 lncRNA upstream 128243 34176389 ~ 34176706 (+) True G88937
TU110949 lncRNA upstream 148983 34155421 ~ 34155966 (+) True G88927
TU110906 lncRNA upstream 345769 33958595 ~ 33959180 (+) True G88887
TU110903 lncRNA upstream 393174 33911420 ~ 33911775 (+) True G88884
TU111008 lncRNA downstream 46048 34369970 ~ 34372180 (+) True G88980
TU111009 lncRNA downstream 46048 34369970 ~ 34373665 (+) False G88980
TU111010 lncRNA downstream 60037 34383959 ~ 34386202 (+) True G88981
TU111044 lncRNA downstream 63332 34387254 ~ 34387672 (+) True G89006
TU111048 lncRNA downstream 95869 34419791 ~ 34420057 (+) True G89010
AMCG00021859 mRNA upstream 18630 34274666 ~ 34286319 (+) True AMCG00021859
AMCG00021858 mRNA upstream 482863 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021855 mRNA upstream 718449 33548596 ~ 33586500 (+) True AMCG00021855
AMCG00021856 mRNA upstream 767039 33475168 ~ 33537910 (+) True AMCG00021856
AMCG00021854 mRNA upstream 851296 33435316 ~ 33453653 (+) True AMCG00021854
AMCG00021869 mRNA downstream 82927 34406849 ~ 34413209 (+) True AMCG00021869
AMCG00021876 mRNA downstream 272994 34596916 ~ 34607621 (+) True AMCG00021876
AMCG00021873 mRNA downstream 301126 34625048 ~ 34678756 (+) True AMCG00021873
AMCG00021875 mRNA downstream 361093 34685015 ~ 34690667 (+) True AMCG00021875
AMCG00021874 mRNA downstream 375926 34699848 ~ 34716167 (+) True AMCG00021874
TU110433 other upstream 3910728 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 3910728 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 4922676 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 4922676 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 5239610 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 602631 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 713917 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 887211 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 1640649 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 1640649 35964571 ~ 35967384 (+) True G89299

Expression Profile