RNA id: AMCG00021863


Basic Information

Item Value
RNA id AMCG00021863
length 1988
RNA type mRNA
GC content 0.40
exon number 11
gene id AMCG00021863
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34263815 ~ 34274711 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTAGAGCTAAGCATGGGACTCGAAAATACTGCTGTTCCGGGTCTGCACTTCCTGGTGTAGATGTCGCCAGTAGATACGGCGGAAGTCGTCACGAACCCCACGGCATGCTGGTCTTATTTAATAAGAAGCTGGGGTACATGCCATTTTTCTACTGTGAAAGAGTAACAGATGCATCTCAGACTGCTCTATCCAGTGTGATCCCAGTGTTTGCAGTGATGAAATTTGACAAAGACGGAAATGTGACGTCATTTGagagaaaaaagacagaatTGTACCAGGAACTTTGTCTCCAAGCTCGGGATTTGCGATTCCAGCATCTCACAAGTATAACAACTCGAAACAACAGGATCATCATTCGAATGGAGTTTCTGAAGGCCGTGATCATGACAGATTGTCTTTTCATCCTGGATTTCCGAAATGTCAATCTGGACCAATGGCTTTTCAAGGAACTGGCTCCTCAGCTCGCTGGGGACGGGCAACTGGTCACCTATTCTCTGCCATTTGAGTTCAGAGCTATAGAGGCCATCCTCCAACACAGaTCACTAGTGGATCCCAAACTGCTGTCGGTGGATAGGAGTAAACTCCACGTGTTACTGCAGAACAGTAAGAACCTATCAGAGCTGGAGACCGACATTAAAGTGTTCAAAGAGAGTCTGCTGAAGATTTTGGATGAGGAGGAGTTAATAGATGAGCTGTGTCTCACCAAATGGACTGACCCTCAGGTgttTGAGGAGAGTAGCTTGGGAATAGACCATGCAGAGGAAATGGAATTGCTTCTGGAGAATTACTACAGACAAGCTGAGGATTTGGCAAATTTGGCACGAGAACTTAAAGTGCTCATTGATGACTCTGAAAGCGTTATCTTCATTAATTTGGATAGCCACCGAAACGTCATGATGCGTCTCAACCTACAGCTGACCATGGGCACCTTCTCTTTGTCTCTATTTGGACTGATCGGAGTTGCATTTGGTATGAATCTGGAGTCTTCACTTGAGGAGGATCCAAGGATTTTCTGGCTGTTCACAGGAATCATGTTTTTAGGAAGTGGTCTTATCTGGAGGCGTCTACTGTCATTCCTGGGCCGACATCTTGAGCCTCCATCTCCACCCCTGATTCCACCCATTTGGAAGAGGAGTCATCTTAACAGCTTGAGAGGGACAGACCTGAAAAGTGGACTGAGACAAGATACTTTAGCTTCTGTTAGAAACCCCCTAATGAATCAAAAGTAGCAGCTTATCAAAGCAGCAGGATGCAGACATATTATGAAAAATTACAGTCCCTAAACGTTGTTATATAGGTGTGACTGATTACAGTTAAAGGTAACTTTAACATTattatcaattacattaatttaaggAGTTTGCTTGCCATTTGTTTCTTACTTTTCAACAAATCTGCATTACtgtcaaatacacattttgtgatttttgaaattgttttatattggcGTGAGAATAAGCTTCTTATTAATATACTCAAGTatcttttaattactttttgttttcaccTATTTAACTAAACCAAAGAAAATGGGTTATGTTTTGGGCCCTGGTCTTGTTGGGTTTGTGATGAAGCCAATTGAACAGGTCAGAAgttgttttaatacatgtaatacaATGCTATTCacgtacattttttttgtgacCAAGTAGGTCCTATTTTATGTCCTATTGCGAAACACTGCCAAATAAgttaaatttattattttcctaacCTAAATACACCTTACATTTAGTATTGTAAGAATTTTGTGATACACTTCAAAATGCAGGTATAGTTGTTGCTATTATATGTAATGTCTTCCAATACTTTCCTTATGTTGTActtctttaaaaatacttattaaTTAATGGAAGGATTTATTTATCATTGTTATGAATGCCCTATTTTTCTGGGTACTGTAATTCATATTGTCAATGTTTGCAATAAATCACAGACTGTATGATAAAATGTGTGCCTATACGTATTGGAAAATCTGACATGTTTA

Function

GO: NA

KEGG:

id description
K16075 MRS2, MFM1; magnesium transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110961 lncRNA downstream 86334 34177047 ~ 34177481 (-) True G88939
TU110940 lncRNA downstream 282987 33976080 ~ 33980828 (-) True G88918
TU110902 lncRNA downstream 418363 33845114 ~ 33845452 (-) True G88883
TU110892 lncRNA downstream 502341 33761242 ~ 33761474 (-) True G88873
TU110890 lncRNA downstream 503195 33760272 ~ 33760620 (-) True G88871
TU111025 lncRNA upstream 9673 34284384 ~ 34286302 (-) True G88991
TU111037 lncRNA upstream 69924 34344635 ~ 34345989 (-) True G89003
TU111045 lncRNA upstream 112543 34387254 ~ 34388010 (-) False AMCG00021868
TU111049 lncRNA upstream 145049 34419760 ~ 34420279 (-) True G89011
TU111206 lncRNA upstream 804862 35079573 ~ 35081173 (-) True G89130
AMCG00021865 mRNA downstream 3419 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021864 mRNA downstream 14168 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021860 mRNA downstream 74289 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021861 mRNA downstream 248925 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021845 mRNA downstream 2166296 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021866 mRNA upstream 52447 34327158 ~ 34348033 (-) True AMCG00021866
AMCG00021867 mRNA upstream 73331 34348042 ~ 34356907 (-) True AMCG00021867
AMCG00021868 mRNA upstream 103990 34378701 ~ 34387667 (-) True AMCG00021868
AMCG00021870 mRNA upstream 470992 34745703 ~ 34757627 (-) True AMCG00021870
AMCG00021878 mRNA upstream 492141 34766852 ~ 34784712 (-) True AMCG00021878
TU110795 other downstream 2194351 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3131630 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3375603 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3839203 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4521007 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 72277 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 72277 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 1100305 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1669041 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2140328 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile