RNA id: AMCG00021865


Basic Information

Item Value
RNA id AMCG00021865
length 1504
RNA type mRNA
GC content 0.38
exon number 8
gene id AMCG00021865
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34251674 ~ 34260396 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCATTCGCTACTGTGCGTCCTAAAAACTGCTGTCCTGGAAGAGATTACTGGTCGCTGGCAGATCCTCTCTCTGTTCACTTACTTCTTGTCAAGGTTCAGGCATGGCTGGTACAggacagagccctgatctcaaatTCCAGCAAGATAGAGTGATGGCAGTGGATGAATGGCATGATCGCTGGAAAGAGGGAAGGATTGGTTTTCATCAGCAAGATGTGCACAAGTTGTTGGAAAAACACCTTGACACAGTTGTAAATGGCAGGAAAGGAGTTCGTTTTCTCTTCCCCCTTTGTGGAAAAGCTATAGACATGAAAtgGTTAGCAGATATGGGCCACACTGTTGTAGGAGTGGAGATAAGTGAGATTGCAATACAGCACTTCTTTTCTGAACAGAACCTAACCTACACTGAGGAGTTAGTTCCAGCTATACCAGGAGCCAAGCTCTCCACAGCAGGGAAATTTGGAGGGATCTGGGACCGAGGATCCCTAGTGGCTATCAATCCCTGTGACAGGCAACGCTATGCCACGTTAATCATTTCTTTAATGGACAAAGACTGCAGATACCTCCTGGATACATTTCTGTACAACCCCAGTTTGTATAAAGGTCCACCATTTTTGGTGCCAGATGAGAATGTGAATGATTTATTTGGCAAAGCATGCAACATTCAGCCACTTGAGTCTACTGATGCtttcacagagaaacagaggagCTGGGGCATAGATTATCTAACAGAGAAAGTGCATCTTCTCACTTTGAAGCAGAAATGAACTTTGAAGAAACTCAGTTAAAGGTCTGTGGTTTTGTGTGGGTTGTCATCTATTCCCCATGACTCTTTAAACTATGGGCCCCTTTATGAACCTGTCAGAAGACCTTAAATCATTTCTGAGCATCCTCCCTCCAAATGTAGGCATGGTTACTTTAATCTCAGTTCCCACTTAAATGTTCatgctttttttgcttttacaaaatattgtgttctgggtcataatatttaaatatatgcaaatgtattaagaTAAACATATTGAGTAACTTGTAGGGGGATACCTGTAGTGTCACTCACTCTGTGTAGGCCAGTAAGTCGTAAATTCAGTTGGGAAAGCTGTTCCATATATAGTTTTGTAAGACaccttttaatatttgtatgttccACCCTGGaacacaatatttataaaaagcaacaagatatgaaaacataaataaatggagaGGTATTGATGTTCAAATACACTTGTTTATAAATTACTTACTTCTCACATAAATGTCAAAGTTTAAGTTATTTGTAATAGTGTGTAttgcagattgttttgtttctgaactAGGAATGCTTTtggattttaataaatcatataatctcagaaattattttaaaacctttttcttctcattaaACCACTGAAAAGGAATTACTAAAATCAGGACAGCACAAAAGGAATCTTTCCATAAACGTGTTTCTAATATTTGTAATGGCTCAAGTTACAATAAAATTGTCTTTATAgaaa

Function

GO: NA

KEGG:

id description
K00569 TPMT, tpmT; thiopurine S-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110961 lncRNA downstream 74193 34177047 ~ 34177481 (-) True G88939
TU110940 lncRNA downstream 270846 33976080 ~ 33980828 (-) True G88918
TU110902 lncRNA downstream 406222 33845114 ~ 33845452 (-) True G88883
TU110892 lncRNA downstream 490200 33761242 ~ 33761474 (-) True G88873
TU110890 lncRNA downstream 491054 33760272 ~ 33760620 (-) True G88871
TU111025 lncRNA upstream 23988 34284384 ~ 34286302 (-) True G88991
TU111037 lncRNA upstream 84239 34344635 ~ 34345989 (-) True G89003
TU111045 lncRNA upstream 126858 34387254 ~ 34388010 (-) False AMCG00021868
TU111049 lncRNA upstream 159364 34419760 ~ 34420279 (-) True G89011
TU111206 lncRNA upstream 819177 35079573 ~ 35081173 (-) True G89130
AMCG00021864 mRNA downstream 2027 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021860 mRNA downstream 62148 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021861 mRNA downstream 236784 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021845 mRNA downstream 2154155 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021849 mRNA downstream 2182559 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021863 mRNA upstream 3419 34263815 ~ 34274711 (-) True AMCG00021863
AMCG00021866 mRNA upstream 66762 34327158 ~ 34348033 (-) True AMCG00021866
AMCG00021867 mRNA upstream 87646 34348042 ~ 34356907 (-) True AMCG00021867
AMCG00021868 mRNA upstream 118305 34378701 ~ 34387667 (-) True AMCG00021868
AMCG00021870 mRNA upstream 485307 34745703 ~ 34757627 (-) True AMCG00021870
TU110795 other downstream 2182210 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3119489 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3363462 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3827062 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4508866 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 86592 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 86592 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 1114620 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1683356 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2154643 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile