RNA id: AMCG00021866


Basic Information

Item Value
RNA id AMCG00021866
length 2340
RNA type mRNA
GC content 0.41
exon number 12
gene id AMCG00021866
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34327158 ~ 34348033 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAAGAGATGACAATAGAGCATTTCTGATCCCATACTTGATTGCACTGGTGTTTGAGGGACTGCCACTGCTGCATCTAGAGCTGGCTATTGGACAGCGTCTTCGCATGGGGAGCATCGGAGTATGGAACAGTATCTCTCCATACCTTGGAGGAGTAGGTGTGGGCTCTCTTATTACTTCCTTTCTGGTTGGTCTCTTCTACAACACCATTCTGGCCTGGGTTCTGTGGTATTTCTTCCACTCATTCCAAGATCCTTTGCCCTGGAGGGACTGTCCTGTGAATGCAAACCACACAGGATATGTTGAAGAATGTATGAAAAGCACTCCAGTAAACTATTTCTGGTACAGGAAGACACTCAATATCACACCTGACATTGAAATTACTGGGTCCCTGCAGTGGTGGATGGTTCTGTGTCTGGCATCTGCATGGGGCATTGTGTACATCTGCTTCATCCGAGGCATCGAGACTATTGGAAAGgCTGTATATGTCACTGCGACATTCCCCTACCTGGTCCTCACCATCTTTCTTATCCGAGCGCTGACACTTCCTGGGGCAGCTGATGGCCTGGTGTATCTTTTCACCCCTCAAtgggaGACACTCAAAGAACCCCAAGTTTGGCTCGATGCTGCCACccagatttttttctctttgtcacTGGCTTTTGGAGGACTCATTGCATTTTCCAGCTACAATCCCCAAAAAAATAACTGTGAAAGGGATGCATTGATCGTTGGAATTATAAACAGTGCCACGTCTATCTACGCATCCATTCCCGTGTTTTCCATCCTTGGTTTCAAGGCTAACTCACTCTTTAATGATTGCTTGAATCAAAACGTGACACTAGAGAACTACAATGACTGGCTGGAATATCTAAATCACACTGATTCACAAAAACTCCAGAACCTTGAGTTGAAGCACTGCAGTCTTCAAACATATCTTGATGAGAGTGCCTCTGGTACTGGACTGGCCTTCATTGTCTTCACAGAGGCCGTAATTAAGATGCCAGGCTCACAGGTGTGGGCAGTGCTGTTTTTTGTCATGCTCTTCAGCCTCGgGCTGATGtgtgtggtttcatttttaatagccTTGATTTTCACTCTTGGCTCTGGAAACTATTGGCTTGAGATTTTCAACACCTACGTGGGATCTTTGCCTCTGCTTATAATAGCATTCTTTGAGATCATAGCTGTGGTTTATATTTATGGCATAAAAAGATTTAACGATGATATAGAATGGATGACTGGGCGGCGGCCAAACTTATATTGGCAGATAACCTGGAGATTTATCAGTCCTTTGATGCTGTTAGTTGTCTTCCTGGCATATGTAGTTGTACAGGTGCAGCAGACACCAACTTACCCTGCTTGGAATCCAAACTATATAAATTTCCCCACACCTCAAATACTGAAATACCCTAACTGGGTATTTGCAATTTGCGTGTTGCTGTCCACCGTTCCTTGTATTTTCATCCCTCTTGTAGCGCTGTACAGATTTATCAATTTCTTAAGAAGATATGTGGCTCGCAGGCGGAACCCCAATCCATACGTCAATGATGCATATGTAGCAGAAATTCAGTGATATTCACATTGACCTTTCTTATTATGACACTTGTCAGTTTCTATGTTGAGATTGCCAGTGGTGCTAGTTTTGAATTAGCATATTTCTGTGAAGGACAGTCTTAATGAACCCATCCCTTATTCCAGACACTCGACAAAActctgtttctgtattttatcaCCAACCTCCTCTGCTTTCACCTTGAACTTTGCTTGTCTGAAGTGAATGGGACCCTCCAAATGTGTCCTACCTGCTGGTTTAACTGATctgtaatacaaatgtgtatattactattataaaaGGCAATATGAGTTCCAGTGGATGGCAATCCAACAGGACAAATTCCCATAGTACACaatctaaacaaaataacacagatAAAGTGtgaacagtaaataataatgactCAATTATTAAAGTGCAAGGGAATTTGTCCAGATAATTTCCAATGTCTTTGATGGAAGCATGGGTAGATGTAACACAAGCACATTCATTCACTGGGGAGTGTTAATATTATTCAGTGACCAATTAAATGCAATGTggattactgtattttgttggTAGATGAGGATTttgattactattatttttcaaagaaggAGAAGAGTGATGTTAGtttcatattattgtatttttaagtgtcAAGTTCTTATCCTCTATGAGGTACACAATGTacgtgaaaatatattttttaactattataagaataatacaCACGCTCAATTTTGTCatgcaaattcaaataaaatacaataccaacaaataaaatgtcatttctaaata

Function

GO: NA

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111025 lncRNA downstream 40856 34284384 ~ 34286302 (-) True G88991
TU110961 lncRNA downstream 149677 34177047 ~ 34177481 (-) True G88939
TU110940 lncRNA downstream 346330 33976080 ~ 33980828 (-) True G88918
TU110902 lncRNA downstream 481706 33845114 ~ 33845452 (-) True G88883
TU110892 lncRNA downstream 565684 33761242 ~ 33761474 (-) True G88873
TU111045 lncRNA upstream 39221 34387254 ~ 34388010 (-) False AMCG00021868
TU111049 lncRNA upstream 71727 34419760 ~ 34420279 (-) True G89011
TU111206 lncRNA upstream 731540 35079573 ~ 35081173 (-) True G89130
TU111310 lncRNA upstream 1022073 35370106 ~ 35370480 (-) True G89212
TU111340 lncRNA upstream 1057024 35405057 ~ 35405340 (-) True G89240
AMCG00021863 mRNA downstream 52447 34263815 ~ 34274711 (-) True AMCG00021863
AMCG00021865 mRNA downstream 66762 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021864 mRNA downstream 77511 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021860 mRNA downstream 137632 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021861 mRNA downstream 312268 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021867 mRNA upstream 9 34348042 ~ 34356907 (-) True AMCG00021867
AMCG00021868 mRNA upstream 30668 34378701 ~ 34387667 (-) True AMCG00021868
AMCG00021870 mRNA upstream 397670 34745703 ~ 34757627 (-) True AMCG00021870
AMCG00021878 mRNA upstream 418819 34766852 ~ 34784712 (-) True AMCG00021878
AMCG00021879 mRNA upstream 442235 34790268 ~ 34809602 (-) True AMCG00021879
TU110795 other downstream 2257694 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3194973 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3438946 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3902546 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4584350 29730077 ~ 29742808 (-) True G88405
TU111315 other upstream 1026983 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1595719 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2067006 36415039 ~ 36438350 (-) False AMCG00021895
TU111619 other upstream 2330494 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 3913354 38261387 ~ 38283855 (-) True G89598

Expression Profile