RNA id: TU111017



Basic Information


Item Value
RNA id TU111017
length 344
lncRNA type read_through
GC content 0.40
exon number 2
gene id AMCG00021867
representative False

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34260004 ~ 34356907 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


NNNTCTTGGCTGAGGTGAACTACATAATAGGGCAGGTTTTGCTTGTGCAGGAGTCCATGACATTTACACCTCCGTTGTAAAAGTTCAAGCCTTAGGGTGCTTTTGTTTCCAGTTAGATCTCACAGGACTCCTCCCATCATCTTTAAGGTTACATTAAGTGAAAGTCCAGTGCATTGAATAACAAGGTTGTTAATAAATGGCTTCAAACACCTTGTATCTTAGTTTCAGAAGACTTTACTCTTCATGCCTTCTTCTCTGTCATTCATATTCACCATGGCAGAAATGGTTGTGAGGACTTGTTGGTCTTCTGGTTTCCGGCAGCAATTCCTTATGActttaaataa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110961 lncRNA downstream 82523 34177047 ~ 34177481 (-) True G88939
TU110940 lncRNA downstream 279176 33976080 ~ 33980828 (-) True G88918
TU110902 lncRNA downstream 414552 33845114 ~ 33845452 (-) True G88883
TU110892 lncRNA downstream 498530 33761242 ~ 33761474 (-) True G88873
TU110890 lncRNA downstream 499384 33760272 ~ 33760620 (-) True G88871
TU111045 lncRNA upstream 33544 34387254 ~ 34388010 (-) False AMCG00021868
TU111049 lncRNA upstream 66050 34419760 ~ 34420279 (-) True G89011
TU111206 lncRNA upstream 725863 35079573 ~ 35081173 (-) True G89130
TU111310 lncRNA upstream 1016396 35370106 ~ 35370480 (-) True G89212
TU111340 lncRNA upstream 1051347 35405057 ~ 35405340 (-) True G89240
AMCG00021864 mRNA downstream 10357 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021860 mRNA downstream 70478 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021861 mRNA downstream 245114 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021845 mRNA downstream 2162485 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021849 mRNA downstream 2190889 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021868 mRNA upstream 24991 34378701 ~ 34387667 (-) True AMCG00021868
AMCG00021870 mRNA upstream 391993 34745703 ~ 34757627 (-) True AMCG00021870
AMCG00021878 mRNA upstream 413142 34766852 ~ 34784712 (-) True AMCG00021878
AMCG00021879 mRNA upstream 436558 34790268 ~ 34809602 (-) True AMCG00021879
AMCG00021877 mRNA upstream 457446 34811156 ~ 34820379 (-) True AMCG00021877
TU110795 other downstream 2190540 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3127819 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3371792 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3835392 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4517196 29730077 ~ 29742808 (-) True G88405
TU111315 other upstream 1021306 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1590042 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2061329 36415039 ~ 36438350 (-) False AMCG00021895
TU111619 other upstream 2324817 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 3907677 38261387 ~ 38283855 (-) True G89598

Expression Profile