RNA id: AMCG00021869



Basic Information


Item Value
RNA id AMCG00021869
length 1080
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00021869
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34406849 ~ 34413209 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTTGTTAGTGGAATTATGTCCCTGACGAGAAGGAGAAAAATGAGCGGCAGTTCCAGCTGGACTTACAGTTCATCTGTGACAGGCTGCAGAAACTCCGCATTAGCGATGTGGTCCTGGCTAAGgCCATAAATACCCCTGCGCATCGCCTGGACCCCAGTCACCTGACAGGGATGAACTCTGTCCCTGACCTTACCCCCTCTCTTGCCAATCTTGGCATACAGCCCATGGGGGGACATGGCCCAGACTCTTTGTCCCCCCAGCCCTCAGCAGAGGGTCCCCAGTGCTCCCGTCAGGGCGAGAGGAAGGAGCCGCGAATCATCAAGGTGTCATTCACGGATGAGATTCAGCTCAACAAGGCAGAGAAGGCCTGGAAGCCTACAATAAATCAGGCTCCCACAGTGGGTGATGACCCCGAGGTCATTAAGACCCAGGAGCTGTTCCGCAGGGTGAGCGGTATTCTGAACAAGCTGACCCCACAGATGTTCCAGCCGTTGATGCATCAAGTGAACGAGCTGACCATTGACACGGAGCAGCGACTCCAGGGTGTCATGGAGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCTCATATGCCAATATGTGCCAGTGCCTTCTGAGGTTCAAAGTCCCGACCGCTGACAAGCCGGGAGTGACGGTGACTTTCCGCACTCTGCTTCTGAACCATTGCCTGAAGGAgtttaagaagaagaaacagaagatgCTGGATGCATCCTTGGTGGGCGAGGAGCGTCAGCGTCTACGTGATGAGCTGCAGGAGGCCAAGCGCAAGGCCCAGTGGCGCTCGCTAGGCCACATAAAGTTTGTTGGGGAGCTGTTCAAGCCCCACATGGACCGGTACTTCAGCCTGATGATGCATGTCGTCAAAAAGAGGAAGACCTCCTCTCGAATCCGCTTCATGCTGCAGGACGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCAGGAGGGGTGAGCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAACTGGAGGCGCACCGTGAGCGGATCAAGGTACAGCAGCAATGCATGATCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111044 lncRNA upstream 19177 34387254 ~ 34387672 (+) True G89006
TU111010 lncRNA upstream 20647 34383959 ~ 34386202 (+) True G88981
TU111009 lncRNA upstream 33184 34369970 ~ 34373665 (+) False G88980
TU111008 lncRNA upstream 34669 34369970 ~ 34372180 (+) True G88980
TU110960 lncRNA upstream 229371 34176954 ~ 34177478 (+) True G88938
TU111048 lncRNA downstream 6582 34419791 ~ 34420057 (+) True G89010
TU111320 lncRNA downstream 993501 35406710 ~ 35406984 (+) True G89222
TU111386 lncRNA downstream 1447707 35860916 ~ 36195602 (+) True G89280
TU111391 lncRNA downstream 1478954 35892163 ~ 35893862 (+) True G89283
TU111393 lncRNA downstream 1487434 35900643 ~ 35901176 (+) True G89285
AMCG00021862 mRNA upstream 82927 34304949 ~ 34323922 (+) True AMCG00021862
AMCG00021859 mRNA upstream 120530 34274666 ~ 34286319 (+) True AMCG00021859
AMCG00021858 mRNA upstream 584763 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021855 mRNA upstream 820349 33548596 ~ 33586500 (+) True AMCG00021855
AMCG00021856 mRNA upstream 868939 33475168 ~ 33537910 (+) True AMCG00021856
AMCG00021876 mRNA downstream 183707 34596916 ~ 34607621 (+) True AMCG00021876
AMCG00021873 mRNA downstream 211839 34625048 ~ 34678756 (+) True AMCG00021873
AMCG00021875 mRNA downstream 271806 34685015 ~ 34690667 (+) True AMCG00021875
AMCG00021874 mRNA downstream 286639 34699848 ~ 34716167 (+) True AMCG00021874
AMCG00021872 mRNA downstream 305457 34718666 ~ 34736343 (+) True AMCG00021872
TU110433 other upstream 4012628 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 4012628 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 5024576 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 5024576 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 5341510 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 513344 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 624630 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 797924 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 1551362 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 1551362 35964571 ~ 35967384 (+) True G89299

Expression Profile